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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_03g158464v5   uncharacterized protein 
 ath-u.5   AT4G02110   transcription coactivator 
 gma-u.5   100799144   BRCT domain-containing protein 
 gma-u.5   100783461   BRCT domain-containing protein 
 sly-u.5   101248303   BRCT domain-containing protein At4g02110 
 osa-u.5   4344363   BRCT domain-containing protein At4g02110-like 
 osa-u.5   4332589   BRCT domain-containing protein At4g02110 
 zma-u.5   103634545   uncharacterized LOC103634545 
 zma-u.5   100216554   BRCT domain-containing protein 
 ppo-u.5   7491267   BRCT domain-containing protein At4g02110 
 ppo-u.5   7460448   BRCT domain-containing protein At4g02110 
 mtr-u.5   11412949   BRCT domain-containing protein At4g02110 

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Top 50 coexpressed genes to CHLRE_03g158464v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_03g158464v5 (cre-r.1 coexpression data)

CoexMap"5723024"


creCHLRE_03g158464v5 | Entrez gene ID : 5723024      
Species cre ath gma sly osa zma ppo mtr sbi nta bra vvi cit hvu bdi sot tae bna ghi
Paralog 1 1 2 1 2 2 2 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0007095 [list] [network] mitotic G2 DNA damage checkpoint signaling  (5 genes)  IEA  
GO:0033314 [list] [network] mitotic DNA replication checkpoint signaling  (8 genes)  IEA  
GO:0006270 [list] [network] DNA replication initiation  (20 genes)  IEA  
GO CC
GO MF
Protein XP_042925777.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 6,  cyto 3  (predict for XP_042925777.1)
Subcellular
localization
TargetP
scret 7,  other 4  (predict for XP_042925777.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_03g158464v5

.
ath-u.5
for
AT4G02110

.
gma-u.5
for
100799144

.
gma-u.5
for
100783461

.
sly-u.5
for
101248303

.
osa-u.5
for
4344363

.
osa-u.5
for
4332589

.
zma-u.5
for
103634545

.
zma-u.5
for
100216554

.
ppo-u.5
for
7491267

.
ppo-u.5
for
7460448

.
mtr-u.5
for
11412949

.


Ortholog ID: 4948
Species ath gma gma sly osa osa zma zma bra ppo ppo mtr tae tae hvu hvu ghi ghi bna bna cre sbi sbi sot sot cit bdi nta nta
Symbol AT4G02110 LOC100783461 LOC100799144 LOC101248303 LOC4344363 LOC4332589 LOC103634545 LOC100216554 LOC103828938 LOC7460448 LOC7491267 LOC11412949 LOC123043588 LOC123046156 LOC123427370 LOC123424638 LOC107946035 LOC107925697 LOC106438665 LOC106388806 CHLRE_03g158464v5 LOC8081086 LOC8077514 LOC102594563 LOC102603882 LOC102624568 LOC100841278 LOC142179332 LOC107759454
Function* transcription coactivator BRCT domain-containing protein BRCT domain-containing protein BRCT domain-containing protein At4g02110 BRCT domain-containing protein At4g02110-like BRCT domain-containing protein At4g02110 uncharacterized LOC103634545 BRCT domain-containing protein BRCT domain-containing protein At4g02110 BRCT domain-containing protein At4g02110 BRCT domain-containing protein At4g02110 BRCT domain-containing protein At4g02110 BRCT domain-containing protein At4g02110 BRCT domain-containing protein At4g02110 BRCT domain-containing protein At4g02110-like BRCT domain-containing protein At4g02110-like BRCT domain-containing protein At4g02110 BRCT domain-containing protein At4g02110 BRCT domain-containing protein At4g02110-like BRCT domain-containing protein At4g02110-like uncharacterized protein BRCT domain-containing protein At4g02110 BRCT domain-containing protein At4g02110 BRCT domain-containing protein At4g02110 BRCT domain-containing protein At4g02110-like BRCT domain-containing protein At4g02110 BRCT domain-containing protein At4g02110 BRCT domain-containing protein At4g02110-like BRCT domain-containing protein At4g02110-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03440 Homologous recombination 6
ath03460 Fanconi anemia pathway 5
ath03030 DNA replication 3
ath03420 Nucleotide excision repair 3
ath03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00240 Pyrimidine metabolism 4
gma01232 Nucleotide metabolism 4
gma03030 DNA replication 3
gma03440 Homologous recombination 3
gma00230 Purine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00230 Purine metabolism 3
gma00240 Pyrimidine metabolism 3
gma00480 Glutathione metabolism 3
gma01232 Nucleotide metabolism 3
gma03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03440 Homologous recombination 3
sly03460 Fanconi anemia pathway 2
sly03410 Base excision repair 2
sly03450 Non-homologous end-joining 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04814 Motor proteins 2
osa03440 Homologous recombination 2
osa03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04814 Motor proteins 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03030 DNA replication 3
zma00270 Cysteine and methionine metabolism 2
zma03082 ATP-dependent chromatin remodeling 2
zma03430 Mismatch repair 2
zma03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03440 Homologous recombination 2
bra03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03030 DNA replication 5
ppo03440 Homologous recombination 4
ppo01230 Biosynthesis of amino acids 2
ppo03410 Base excision repair 2
ppo03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03030 DNA replication 3
mtr04814 Motor proteins 3
mtr03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03440 Homologous recombination 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03440 Homologous recombination 4
ghi03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03440 Homologous recombination 5
ghi03460 Fanconi anemia pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03440 Homologous recombination 5
bna03460 Fanconi anemia pathway 5
bna03030 DNA replication 3
bna03420 Nucleotide excision repair 3
bna03430 Mismatch repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03440 Homologous recombination 6
bna03460 Fanconi anemia pathway 6
bna00230 Purine metabolism 4
bna00240 Pyrimidine metabolism 4
bna00480 Glutathione metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03440 Homologous recombination 4
sot03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03440 Homologous recombination 4
sot03030 DNA replication 4
sot03460 Fanconi anemia pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03030 DNA replication 8
bdi03440 Homologous recombination 3
bdi03460 Fanconi anemia pathway 2
bdi03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03440 Homologous recombination 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03440 Homologous recombination 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 828135 100783461 100799144 101248303 4344363 4332589 103634545 100216554 103828938 7460448 7491267 11412949 123043588 123046156 123427370 123424638 107946035 107925697 106438665 106388806 5723024 8081086 8077514 102594563 102603882 102624568 100841278 142179332 107759454
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