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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_16g654992v5   uncharacterized protein 
 ath-u.5   AT4G01880   methyltransferase 
 gma-u.5   100793810   tRNA:m(4)X modification enzyme TRM13 homolog 
 sly-u.5   101261447   uncharacterized LOC101261447 
 osa-u.5   9267457   tRNA:m(4)X modification enzyme TRM13-like 
 zma-u.5   100272611   methyltransferase 
 bra-r.6   103858799   tRNA:m(4)X modification enzyme TRM13 homolog 
 vvi-u.5   100248556   uncharacterized LOC100248556 
 ppo-u.5   7481431   uncharacterized LOC7481431 
 mtr-u.5   25482524   tRNA:m(4)X modification enzyme TRM13 homolog 
 tae-r.2   123123625   tRNA:m(4)X modification enzyme TRM13 
 tae-r.2   123114136   tRNA:m(4)X modification enzyme TRM13 
 tae-r.2   123087791   tRNA:m(4)X modification enzyme TRM13 
 hvu-r.1   123394906   tRNA:m(4)X modification enzyme TRM13 
 ghi-r.1   107954388   tRNA:m(4)X modification enzyme TRM13 homolog 
 bna-r.1   125574840   tRNA:m(4)X modification enzyme TRM13-like 
 bna-r.1   106438647   tRNA:m(4)X modification enzyme TRM13 homolog 
 bna-r.1   106389094   tRNA:m(4)X modification enzyme TRM13 homolog 
 sbi-r.1   8079684   tRNA:m(4)X modification enzyme TRM13 homolog 
 sot-r.1   102589230   tRNA:m(4)X modification enzyme TRM13 homolog 
 cit-r.1   102630836   uncharacterized LOC102630836 
 bdi-r.1   100823311   tRNA:m(4)X modification enzyme TRM13 
 nta-r.1   107829617   uncharacterized LOC107829617 
 nta-r.1   107824039   tRNA:m(4)X modification enzyme TRM13 
 nta-r.1   107771521   tRNA:m(4)X modification enzyme TRM13 

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Top 50 coexpressed genes to CHLRE_16g654992v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_16g654992v5 (cre-r.1 coexpression data)

CoexMap"5723761"


creCHLRE_16g654992v5 | Entrez gene ID : 5723761      
Species cre ath gma sly osa zma bra vvi ppo mtr tae hvu ghi bna sbi sot cit bdi nta
Paralog 1 1 1 1 1 1 1 1 1 1 3 1 1 3 1 1 1 1 3
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0030488 [list] [network] tRNA methylation  (34 genes)  IEA  
GO CC
GO MF
GO:0106050 [list] [network] tRNA 2'-O-methyltransferase activity  (1 genes)  IEA  
Protein XP_001698127.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 6,  mito 3,  cysk_nucl 3  (predict for XP_001698127.2)
Subcellular
localization
TargetP
other 5,  chlo 4  (predict for XP_001698127.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_16g654992v5
ath-u.5
for
AT4G01880
gma-u.5
for
100793810
sly-u.5
for
101261447
osa-u.5
for
9267457
zma-u.5
for
100272611
bra-r.6
for
103858799
vvi-u.5
for
100248556
ppo-u.5
for
7481431
mtr-u.5
for
25482524
tae-r.2
for
123123625
tae-r.2
for
123114136
tae-r.2
for
123087791
hvu-r.1
for
123394906
ghi-r.1
for
107954388
bna-r.1
for
125574840
bna-r.1
for
106438647
bna-r.1
for
106389094
sbi-r.1
for
8079684
sot-r.1
for
102589230
cit-r.1
for
102630836
bdi-r.1
for
100823311
nta-r.1
for
107829617
nta-r.1
for
107824039
nta-r.1
for
107771521


Ortholog ID: 9603
Species cre ath gma sly osa zma bra vvi ppo mtr tae tae tae hvu ghi bna bna bna sbi sot cit bdi nta nta nta
Symbol CHLRE_16g654992v5 AT4G01880 LOC100793810 LOC101261447 LOC9267457 LOC100272611 LOC103858799 LOC100248556 LOC7481431 LOC25482524 LOC123123625 LOC123114136 LOC123087791 LOC123394906 LOC107954388 LOC125574840 LOC106438647 LOC106389094 LOC8079684 LOC102589230 LOC102630836 LOC100823311 LOC107829617 LOC107824039 LOC107771521
Function* uncharacterized protein methyltransferase tRNA:m(4)X modification enzyme TRM13 homolog uncharacterized LOC101261447 tRNA:m(4)X modification enzyme TRM13-like methyltransferase tRNA:m(4)X modification enzyme TRM13 homolog uncharacterized LOC100248556 uncharacterized LOC7481431 tRNA:m(4)X modification enzyme TRM13 homolog tRNA:m(4)X modification enzyme TRM13 tRNA:m(4)X modification enzyme TRM13 tRNA:m(4)X modification enzyme TRM13 tRNA:m(4)X modification enzyme TRM13 tRNA:m(4)X modification enzyme TRM13 homolog tRNA:m(4)X modification enzyme TRM13-like tRNA:m(4)X modification enzyme TRM13 homolog tRNA:m(4)X modification enzyme TRM13 homolog tRNA:m(4)X modification enzyme TRM13 homolog tRNA:m(4)X modification enzyme TRM13 homolog uncharacterized LOC102630836 tRNA:m(4)X modification enzyme TRM13 uncharacterized LOC107829617 tRNA:m(4)X modification enzyme TRM13 tRNA:m(4)X modification enzyme TRM13
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03050 Proteasome 2
zma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00970 Aminoacyl-tRNA biosynthesis 3
vvi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00030 Pentose phosphate pathway 2
ppo00480 Glutathione metabolism 2
ppo01200 Carbon metabolism 2
ppo04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04814 Motor proteins 2
mtr00010 Glycolysis / Gluconeogenesis 2
mtr00620 Pyruvate metabolism 2
mtr00100 Steroid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03020 RNA polymerase 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00970 Aminoacyl-tRNA biosynthesis 3
tae03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 3
sbi03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00230 Purine metabolism 2
nta03008 Ribosome biogenesis in eukaryotes 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 5723761 828223 100793810 101261447 9267457 100272611 103858799 100248556 7481431 25482524 123123625 123114136 123087791 123394906 107954388 125574840 106438647 106389094 8079684 102589230 102630836 100823311 107829617 107824039 107771521
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