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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_10g460532v5   uncharacterized protein 
 ath-u.5   APC2   anaphase-promoting complex/cyclosome 2 
 gma-u.5   100805741   anaphase-promoting complex subunit 2 
 gma-u.5   100785428   anaphase-promoting complex subunit 2 
 sly-u.5   101243993   anaphase-promoting complex subunit 2 
 osa-u.5   4336204   anaphase-promoting complex subunit 2 
 zma-u.5   103626410   anaphase-promoting complex subunit 2 
 bra-r.6   103863945   anaphase-promoting complex subunit 2 
 bra-r.6   103850413   anaphase-promoting complex subunit 2 
 vvi-u.5   100263601   anaphase-promoting complex subunit 2 
 ppo-u.5   7498184   anaphase-promoting complex subunit 2 
 ppo-u.5   7498183   anaphase-promoting complex subunit 2 
 mtr-u.5   25492960   anaphase-promoting complex subunit 2 
 mtr-u.5   11443923   anaphase-promoting complex subunit 2 
 mtr-u.5   11440309   anaphase-promoting complex subunit 2 
 tae-r.2   123053682   anaphase-promoting complex subunit 2 
 tae-r.2   123189567   anaphase-promoting complex subunit 2 
 tae-r.2   123045800   anaphase-promoting complex subunit 2 
 hvu-r.1   123427046   anaphase-promoting complex subunit 2 
 ghi-r.1   107920483   anaphase-promoting complex subunit 2 
 ghi-r.1   107893681   anaphase-promoting complex subunit 2 
 bna-r.1   106446011   anaphase-promoting complex subunit 2 
 bna-r.1   106435451   anaphase-promoting complex subunit 2 
 bna-r.1   106390927   anaphase-promoting complex subunit 2 
 sbi-r.1   8065577   anaphase-promoting complex subunit 2 
 sot-r.1   102580645   anaphase-promoting complex subunit 2 
 cit-r.1   102607463   anaphase-promoting complex subunit 2 
 bdi-r.1   100826301   anaphase-promoting complex subunit 2 
 nta-r.1   107775835   anaphase-promoting complex subunit 2 
 nta-r.1   107804103   anaphase-promoting complex subunit 2 

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Top 50 coexpressed genes to CHLRE_10g460532v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_10g460532v5 (cre-r.1 coexpression data)

CoexMap"5723961"


creCHLRE_10g460532v5 | Entrez gene ID : 5723961    
Species cre ath gma sly osa zma bra vvi ppo mtr tae hvu ghi bna sbi sot cit bdi nta
Paralog 1 1 2 1 1 1 2 1 2 3 3 1 2 3 1 1 1 1 2
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG cre04120 [list] [network] Ubiquitin mediated proteolysis (48 genes)
GO BP
GO:0006511 [list] [network] ubiquitin-dependent protein catabolic process  (159 genes)  IEA  
GO CC
GO:0005680 [list] [network] anaphase-promoting complex  (10 genes)  IEA  
GO MF
GO:0031625 [list] [network] ubiquitin protein ligase binding  (17 genes)  IEA  
Protein XP_042920541.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  pero 4,  E.R. 1  (predict for XP_042920541.1)
Subcellular
localization
TargetP
scret 5  (predict for XP_042920541.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_10g460532v5
ath-u.5
for
APC2
gma-u.5
for
100805741
gma-u.5
for
100785428
sly-u.5
for
101243993
osa-u.5
for
4336204
zma-u.5
for
103626410
bra-r.6
for
103863945
bra-r.6
for
103850413
vvi-u.5
for
100263601
ppo-u.5
for
7498184
ppo-u.5
for
7498183
mtr-u.5
for
25492960
mtr-u.5
for
11443923
mtr-u.5
for
11440309
tae-r.2
for
123053682
tae-r.2
for
123189567
tae-r.2
for
123045800
hvu-r.1
for
123427046
ghi-r.1
for
107920483
ghi-r.1
for
107893681
bna-r.1
for
106446011
bna-r.1
for
106435451
bna-r.1
for
106390927
sbi-r.1
for
8065577
sot-r.1
for
102580645
cit-r.1
for
102607463
bdi-r.1
for
100826301
nta-r.1
for
107775835
nta-r.1
for
107804103


Ortholog ID: 7501
Species cre ath gma gma sly osa zma bra bra vvi ppo ppo mtr mtr mtr tae tae tae hvu ghi ghi bna bna bna sbi sot cit bdi nta nta
Symbol CHLRE_10g460532v5 APC2 LOC100805741 LOC100785428 LOC101243993 LOC4336204 LOC103626410 LOC103863945 LOC103850413 LOC100263601 LOC7498184 LOC7498183 LOC25492960 LOC11443923 LOC11440309 LOC123053682 LOC123189567 LOC123045800 LOC123427046 LOC107920483 LOC107893681 LOC106446011 LOC106435451 LOC106390927 LOC8065577 LOC102580645 LOC102607463 LOC100826301 LOC107775835 LOC107804103
Function* uncharacterized protein anaphase-promoting complex/cyclosome 2 anaphase-promoting complex subunit 2 anaphase-promoting complex subunit 2 anaphase-promoting complex subunit 2 anaphase-promoting complex subunit 2 anaphase-promoting complex subunit 2 anaphase-promoting complex subunit 2 anaphase-promoting complex subunit 2 anaphase-promoting complex subunit 2 anaphase-promoting complex subunit 2 anaphase-promoting complex subunit 2 anaphase-promoting complex subunit 2 anaphase-promoting complex subunit 2 anaphase-promoting complex subunit 2 anaphase-promoting complex subunit 2 anaphase-promoting complex subunit 2 anaphase-promoting complex subunit 2 anaphase-promoting complex subunit 2 anaphase-promoting complex subunit 2 anaphase-promoting complex subunit 2 anaphase-promoting complex subunit 2 anaphase-promoting complex subunit 2 anaphase-promoting complex subunit 2 anaphase-promoting complex subunit 2 anaphase-promoting complex subunit 2 anaphase-promoting complex subunit 2 anaphase-promoting complex subunit 2 anaphase-promoting complex subunit 2 anaphase-promoting complex subunit 2
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04120 Ubiquitin mediated proteolysis 3
gma03020 RNA polymerase 2
gma03420 Nucleotide excision repair 2
gma04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04120 Ubiquitin mediated proteolysis 4
gma03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03030 DNA replication 4
sly03410 Base excision repair 3
sly03420 Nucleotide excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03015 mRNA surveillance pathway 2
osa00970 Aminoacyl-tRNA biosynthesis 2
osa03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03020 RNA polymerase 2
zma03008 Ribosome biogenesis in eukaryotes 2
zma03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04120 Ubiquitin mediated proteolysis 3
mtr03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04120 Ubiquitin mediated proteolysis 3
mtr01230 Biosynthesis of amino acids 2
mtr03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00270 Cysteine and methionine metabolism 3
mtr04120 Ubiquitin mediated proteolysis 3
mtr03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 6
tae04120 Ubiquitin mediated proteolysis 3
tae03440 Homologous recombination 2
tae03450 Non-homologous end-joining 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04120 Ubiquitin mediated proteolysis 3
tae03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04120 Ubiquitin mediated proteolysis 3
tae04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 5
hvu00240 Pyrimidine metabolism 2
hvu01240 Biosynthesis of cofactors 2
hvu00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04120 Ubiquitin mediated proteolysis 2
ghi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04120 Ubiquitin mediated proteolysis 2
ghi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04120 Ubiquitin mediated proteolysis 3
bna03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04120 Ubiquitin mediated proteolysis 3
bna03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04120 Ubiquitin mediated proteolysis 3
bna03013 Nucleocytoplasmic transport 2
bna03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03430 Mismatch repair 2
sot00240 Pyrimidine metabolism 2
sot01232 Nucleotide metabolism 2
sot00270 Cysteine and methionine metabolism 2
sot03030 DNA replication 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03420 Nucleotide excision repair 3
cit00520 Amino sugar and nucleotide sugar metabolism 2
cit03022 Basal transcription factors 2
cit04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03018 RNA degradation 2
nta04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04120 Ubiquitin mediated proteolysis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 5723961 815008 100805741 100785428 101243993 4336204 103626410 103863945 103850413 100263601 7498184 7498183 25492960 11443923 11440309 123053682 123189567 123045800 123427046 107920483 107893681 106446011 106435451 106390927 8065577 102580645 102607463 100826301 107775835 107804103
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