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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_10g461750v5   uncharacterized protein 
 ath-u.5   MET1   methyltransferase 1 
 gma-u.5   100802765   DNA (cytosine-5)-methyltransferase 1 
 gma-u.5   100797667   DNA (cytosine-5)-methyltransferase 1 
 sly-u.5   MET1   DNA (cytosine-5)-methyltransferase 1 
 osa-u.5   4342575   DNA (cytosine-5)-methyltransferase 1B-like 
 osa-u.5   4334435   DNA (cytosine-5)-methyltransferase 1A-like 
 zma-u.5   542082   DNA methyl transferase 1 
 zma-u.5   103632028   DNA (cytosine-5)-methyltransferase 1B 
 vvi-u.5   100240896   DNA (cytosine-5)-methyltransferase 1 
 vvi-u.5   100251127   DNA (cytosine-5)-methyltransferase 1 
 vvi-u.5   100252276   DNA (cytosine-5)-methyltransferase 1B 
 ppo-u.5   112325061   DNA (cytosine-5)-methyltransferase 1 
 ppo-u.5   7463012   DNA (cytosine-5)-methyltransferase 1 
 ppo-u.5   7484095   DNA (cytosine-5)-methyltransferase 1 
 mtr-u.5   25486610   DNA (cytosine-5)-methyltransferase 1 
 mtr-u.5   11408961   DNA (cytosine-5)-methyltransferase 1 

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Top 50 coexpressed genes to CHLRE_10g461750v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_10g461750v5 (cre-r.1 coexpression data)

CoexMap"5723973"


creCHLRE_10g461750v5 | Entrez gene ID : 5723973      
Species cre ath gma sly osa zma vvi ppo mtr sbi nta bra hvu cit bdi sot tae bna ghi
Paralog 1 1 2 1 2 2 3 3 2 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG cre00270 [list] [network] Cysteine and methionine metabolism (53 genes)
GO BP
GO CC
GO:0005634 [list] [network] nucleus  (1576 genes)  IEA  
GO MF
GO:0008168 [list] [network] methyltransferase activity  (194 genes)  IEA  
Protein XP_042920564.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  cyto 4,  nucl 2  (predict for XP_042920564.1)
Subcellular
localization
TargetP
other 5,  mito 5  (predict for XP_042920564.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_10g461750v5

.
ath-u.5
for
MET1

.
gma-u.5
for
100802765

.
gma-u.5
for
100797667

.
sly-u.5
for
MET1

.
osa-u.5
for
4342575

.
osa-u.5
for
4334435

.
zma-u.5
for
542082

.
zma-u.5
for
103632028

.
vvi-u.5
for
100240896

.
vvi-u.5
for
100251127

.
vvi-u.5
for
100252276

.
ppo-u.5
for
112325061

.
ppo-u.5
for
7463012

.
ppo-u.5
for
7484095

.
mtr-u.5
for
25486610

.
mtr-u.5
for
11408961

.


Ortholog ID: 3952
Species gma gma sly osa osa zma zma bra bra vvi vvi ppo ppo mtr mtr tae hvu ghi ghi bna bna cre sbi sbi sot sot cit cit bdi nta nta
Symbol LOC100802765 LOC100797667 MET1 LOC4342575 LOC4334435 LOC542082 LOC103632028 LOC103864404 LOC103842448 LOC100240896 LOC100252276 LOC7463012 LOC7484095 LOC25486610 LOC11408961 LOC123044893 LOC123426213 LOC107934345 LOC107959775 LOC106371341 LOC106446455 CHLRE_10g461750v5 LOC8060753 LOC8061163 LOC102604332 LOC102587106 LOC102627333 LOC127898681 LOC100829061 LOC107759467 LOC107774645
Function* DNA (cytosine-5)-methyltransferase 1 DNA (cytosine-5)-methyltransferase 1 DNA (cytosine-5)-methyltransferase 1 DNA (cytosine-5)-methyltransferase 1B-like DNA (cytosine-5)-methyltransferase 1A-like DNA methyl transferase 1 DNA (cytosine-5)-methyltransferase 1B DNA (cytosine-5)-methyltransferase 1 DNA (cytosine-5)-methyltransferase 1 DNA (cytosine-5)-methyltransferase 1 DNA (cytosine-5)-methyltransferase 1B DNA (cytosine-5)-methyltransferase 1 DNA (cytosine-5)-methyltransferase 1 DNA (cytosine-5)-methyltransferase 1 DNA (cytosine-5)-methyltransferase 1 DNA (cytosine-5)-methyltransferase 1B DNA (cytosine-5)-methyltransferase 1B DNA (cytosine-5)-methyltransferase 1 DNA (cytosine-5)-methyltransferase 1 DNA (cytosine-5)-methyltransferase 1 DNA (cytosine-5)-methyltransferase 1-like uncharacterized protein DNA (cytosine-5)-methyltransferase 1B DNA (cytosine-5)-methyltransferase 1A DNA (cytosine-5)-methyltransferase 1B-like DNA (cytosine-5)-methyltransferase 1B-like DNA (cytosine-5)-methyltransferase 1B-like DNA (cytosine-5)-methyltransferase 1B-like DNA (cytosine-5)-methyltransferase 1B DNA (cytosine-5)-methyltransferase 1B-like DNA (cytosine-5)-methyltransferase 1B
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03030 DNA replication 5
gma03420 Nucleotide excision repair 3
gma03430 Mismatch repair 3
gma00270 Cysteine and methionine metabolism 3
gma03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03030 DNA replication 5
gma03440 Homologous recombination 2
gma00230 Purine metabolism 2
gma00240 Pyrimidine metabolism 2
gma00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03013 Nucleocytoplasmic transport 3
sly00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03030 DNA replication 12
osa03440 Homologous recombination 3
osa03420 Nucleotide excision repair 3
osa03430 Mismatch repair 2
osa03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04814 Motor proteins 4
osa00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03030 DNA replication 3
zma03410 Base excision repair 3
zma00270 Cysteine and methionine metabolism 2
zma03082 ATP-dependent chromatin remodeling 2
zma03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03030 DNA replication 3
zma03410 Base excision repair 3
zma00270 Cysteine and methionine metabolism 2
zma03420 Nucleotide excision repair 2
zma03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03030 DNA replication 4
bra03440 Homologous recombination 4
bra03420 Nucleotide excision repair 2
bra03430 Mismatch repair 2
bra03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00270 Cysteine and methionine metabolism 2
vvi00330 Arginine and proline metabolism 2
vvi01200 Carbon metabolism 2
vvi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03030 DNA replication 11
ppo03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00270 Cysteine and methionine metabolism 3
ppo00230 Purine metabolism 2
ppo00240 Pyrimidine metabolism 2
ppo00480 Glutathione metabolism 2
ppo01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 3
mtr00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03420 Nucleotide excision repair 3
mtr03440 Homologous recombination 3
mtr03460 Fanconi anemia pathway 3
mtr00270 Cysteine and methionine metabolism 2
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03030 DNA replication 10
tae03430 Mismatch repair 8
tae03410 Base excision repair 5
tae03420 Nucleotide excision repair 5
tae00270 Cysteine and methionine metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03030 DNA replication 11
ghi00270 Cysteine and methionine metabolism 2
ghi03410 Base excision repair 2
ghi03420 Nucleotide excision repair 2
ghi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03030 DNA replication 11
ghi00270 Cysteine and methionine metabolism 2
ghi03410 Base excision repair 2
ghi03420 Nucleotide excision repair 2
ghi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03030 DNA replication 7
bna00270 Cysteine and methionine metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00270 Cysteine and methionine metabolism 4
bna03030 DNA replication 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03030 DNA replication 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03030 DNA replication 6
sbi03410 Base excision repair 3
sbi03420 Nucleotide excision repair 3
sbi03440 Homologous recombination 3
sbi03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00230 Purine metabolism 2
sot00240 Pyrimidine metabolism 2
sot00480 Glutathione metabolism 2
sot01232 Nucleotide metabolism 2
sot03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03030 DNA replication 3
sot00230 Purine metabolism 2
sot00240 Pyrimidine metabolism 2
sot00480 Glutathione metabolism 2
sot01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00970 Aminoacyl-tRNA biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03030 DNA replication 4
bdi03430 Mismatch repair 4
bdi03410 Base excision repair 3
bdi03420 Nucleotide excision repair 3
bdi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03460 Fanconi anemia pathway 3
nta00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03460 Fanconi anemia pathway 2
nta00270 Cysteine and methionine metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100802765 100797667 543721 4342575 4334435 542082 103632028 103864404 103842448 100240896 100252276 7463012 7484095 25486610 11408961 123044893 123426213 107934345 107959775 106371341 106446455 5723973 8060753 8061163 102604332 102587106 102627333 127898681 100829061 107759467 107774645
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