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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_04g214350v5   uncharacterized protein 
 ath-u.5   ICU2   DNA-directed DNA polymerase 
 gma-u.5   100798779   DNA polymerase alpha catalytic subunit 
 sly-u.5   DNApolalpha   DNA polymerase alpha catalytic subunit 
 osa-u.5   4325052   DNA polymerase alpha catalytic subunit-like 
 zma-u.5   100194009   uncharacterized LOC100194009 
 vvi-u.5   100250805   DNA polymerase alpha catalytic subunit 
 ppo-u.5   7483107   DNA polymerase alpha catalytic subunit 
 mtr-u.5   11410926   DNA polymerase alpha catalytic subunit 

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Top 50 coexpressed genes to CHLRE_04g214350v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_04g214350v5 (cre-r.1 coexpression data)

CoexMap"5724235"


creCHLRE_04g214350v5 | Entrez gene ID : 5724235    
Species cre ath gma sly osa zma vvi ppo mtr ghi cit hvu bdi sot bra sbi tae nta bna
Paralog 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG cre03030 [list] [network] DNA replication (30 genes)
GO BP
GO:0006272 [list] [network] leading strand elongation  (4 genes)  IEA  
GO:0006273 [list] [network] lagging strand elongation  (5 genes)  IEA  
GO:1902975 [list] [network] mitotic DNA replication initiation  (5 genes)  IEA  
GO:0006260 [list] [network] DNA replication  (93 genes)  IEA  
GO CC
GO:0005658 [list] [network] alpha DNA polymerase:primase complex  (4 genes)  IEA  
GO MF
GO:0019103 [list] [network] pyrimidine nucleotide binding  (1 genes)  IEA  
GO:0003688 [list] [network] DNA replication origin binding  (10 genes)  IEA  
GO:0003887 [list] [network] DNA-directed DNA polymerase activity  (22 genes)  IEA  
GO:0003697 [list] [network] single-stranded DNA binding  (46 genes)  IEA  
GO:0003682 [list] [network] chromatin binding  (81 genes)  IEA  
GO:0017076 [list] [network] purine nucleotide binding  (1423 genes)  IEA  
Protein XP_042925125.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 7,  nucl 1,  mito 1,  pero 1,  cyto_nucl 1,  cysk_nucl 1,  nucl_plas 1  (predict for XP_042925125.1)
Subcellular
localization
TargetP
mito 6,  other 3  (predict for XP_042925125.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_04g214350v5

.
ath-u.5
for
ICU2

.
gma-u.5
for
100798779

.
sly-u.5
for
DNApolalpha

.
osa-u.5
for
4325052

.
zma-u.5
for
100194009

.
vvi-u.5
for
100250805

.
ppo-u.5
for
7483107

.
mtr-u.5
for
11410926

.


Ortholog ID: 8675
Species ath gma sly osa zma bra bra vvi ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol ICU2 LOC100798779 DNApolalpha LOC4325052 LOC100194009 LOC103829539 LOC103853956 LOC100250805 LOC7483107 LOC11410926 LOC123071553 LOC123071555 LOC123444793 LOC107913234 LOC107897934 LOC106390345 LOC106358364 CHLRE_04g214350v5 LOC8062384 LOC102587331 LOC102618566 LOC100840820 LOC107822467 LOC107796644
Function* DNA-directed DNA polymerase DNA polymerase alpha catalytic subunit DNA polymerase alpha catalytic subunit DNA polymerase alpha catalytic subunit-like uncharacterized LOC100194009 DNA polymerase alpha catalytic subunit DNA polymerase alpha catalytic subunit-like DNA polymerase alpha catalytic subunit DNA polymerase alpha catalytic subunit DNA polymerase alpha catalytic subunit DNA polymerase alpha catalytic subunit DNA polymerase alpha catalytic subunit DNA polymerase alpha catalytic subunit DNA polymerase alpha catalytic subunit DNA polymerase alpha catalytic subunit DNA polymerase alpha catalytic subunit DNA polymerase alpha catalytic subunit uncharacterized protein DNA polymerase alpha catalytic subunit DNA polymerase alpha catalytic subunit DNA polymerase alpha catalytic subunit DNA polymerase alpha catalytic subunit DNA polymerase alpha catalytic subunit-like DNA polymerase alpha catalytic subunit-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03030 DNA replication 10
ath03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03030 DNA replication 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03030 DNA replication 11
sly03420 Nucleotide excision repair 3
sly03430 Mismatch repair 2
sly03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03030 DNA replication 10
osa03440 Homologous recombination 3
osa03420 Nucleotide excision repair 2
osa03430 Mismatch repair 2
osa03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03430 Mismatch repair 3
zma03030 DNA replication 3
zma03410 Base excision repair 3
zma00270 Cysteine and methionine metabolism 2
zma00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03030 DNA replication 10
bra03420 Nucleotide excision repair 3
bra03430 Mismatch repair 3
bra03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03030 DNA replication 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03030 DNA replication 10
ppo00230 Purine metabolism 2
ppo00240 Pyrimidine metabolism 2
ppo00480 Glutathione metabolism 2
ppo01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03030 DNA replication 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03082 ATP-dependent chromatin remodeling 3
tae03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03030 DNA replication 8
tae03440 Homologous recombination 7
tae03430 Mismatch repair 6
tae03410 Base excision repair 4
tae03420 Nucleotide excision repair 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00970 Aminoacyl-tRNA biosynthesis 4
hvu03030 DNA replication 2
hvu03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03030 DNA replication 12
ghi03410 Base excision repair 2
ghi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03030 DNA replication 12
ghi03410 Base excision repair 2
ghi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03030 DNA replication 9
bna00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03030 DNA replication 8
bna00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03030 DNA replication 5
cre03410 Base excision repair 3
cre03420 Nucleotide excision repair 3
cre03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03030 DNA replication 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03030 DNA replication 4
sot03440 Homologous recombination 3
sot03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03030 DNA replication 8
cit04814 Motor proteins 3
cit03440 Homologous recombination 2
cit03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03030 DNA replication 4
bdi03410 Base excision repair 3
bdi03420 Nucleotide excision repair 3
bdi03430 Mismatch repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03030 DNA replication 12
nta03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03030 DNA replication 14
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 836845 100798779 101055576 4325052 100194009 103829539 103853956 100250805 7483107 11410926 123071553 123071555 123444793 107913234 107897934 106390345 106358364 5724235 8062384 102587331 102618566 100840820 107822467 107796644
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