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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_04g214150v5   uncharacterized protein 
 ath-u.5   THI1   thiazole biosynthetic enzyme, chloroplast (ARA6) (THI1) (THI4) 
 gma-u.5   100788953   thiamine thiazole synthase 2, chloroplastic 
 gma-u.5   100794288   thiamine thiazole synthase 2, chloroplastic 
 gma-u.5   SC-04   thiamin biosynthetic enzyme 
 sly-u.5   101257192   thiamine thiazole synthase, chloroplastic 
 osa-u.5   4343443   thiamine thiazole synthase, chloroplastic-like 
 zma-u.5   542715   thiamine biosynthesis 2 
 bra-r.6   103851941   thiamine thiazole synthase, chloroplastic 
 bra-r.6   103844930   thiamine thiazole synthase, chloroplastic 
 bra-r.6   103857026   thiamine thiazole synthase, chloroplastic-like 
 vvi-u.5   THI1-1   thiamine thiazole synthase 1, chloroplastic-like 
 vvi-u.5   THI1-2   thiamine thiazole synthase 2, chloroplastic 
 ppo-u.5   7470933   thiamine thiazole synthase, chloroplastic 
 ppo-u.5   7479083   thiamine thiazole synthase 2, chloroplastic 
 ppo-u.5   7485534   thiamine thiazole synthase 2, chloroplastic 
 mtr-u.5   25485243   thiamine thiazole synthase, chloroplastic 
 mtr-u.5   11446281   thiamine thiazole synthase, chloroplastic 
 tae-r.2   123148177   thiamine thiazole synthase 2, chloroplastic 
 tae-r.2   123066078   thiamine thiazole synthase 2, chloroplastic 
 tae-r.2   123160697   thiamine thiazole synthase 2, chloroplastic 
 hvu-r.1   123408874   thiamine thiazole synthase 2, chloroplastic 
 ghi-r.1   107928645   thiamine thiazole synthase, chloroplastic-like 
 ghi-r.1   107917921   thiamine thiazole synthase, chloroplastic 
 ghi-r.1   107958248   thiamine thiazole synthase 2, chloroplastic 
 bna-r.1   125601255   thiamine thiazole synthase, chloroplastic 
 bna-r.1   106346007   thiamine thiazole synthase, chloroplastic 
 bna-r.1   106347311   thiamine thiazole synthase, chloroplastic 
 sbi-r.1   8078187   thiamine thiazole synthase 1, chloroplastic 
 sbi-r.1   8063504   thiamine thiazole synthase 2, chloroplastic 
 sot-r.1   102598996   thiamine thiazole synthase 1, chloroplastic 
 cit-r.1   102626594   thiamine thiazole synthase, chloroplastic-like 
 cit-r.1   102629135   thiamine thiazole synthase 2, chloroplastic 
 bdi-r.1   100841709   thiamine thiazole synthase 2, chloroplastic 
 nta-r.1   107798781   thiamine thiazole synthase, chloroplastic-like 
 nta-r.1   107797059   thiamine thiazole synthase, chloroplastic-like 

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Top 50 coexpressed genes to CHLRE_04g214150v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_04g214150v5 (cre-r.1 coexpression data)

CoexMap"5724279"


creCHLRE_04g214150v5 | Entrez gene ID : 5724279      
Species cre ath gma sly osa zma bra vvi ppo mtr tae hvu ghi bna sbi sot cit bdi nta
Paralog 1 1 3 1 1 1 3 2 3 2 3 1 3 3 2 1 2 1 2
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG cre00730 [list] [network] Thiamine metabolism (13 genes)
cre01240 [list] [network] Biosynthesis of cofactors (149 genes)
GO BP
GO:0009228 [list] [network] thiamine biosynthetic process  (5 genes)  IEA  
GO CC
GO MF
Protein XP_001698672.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 8,  mito 1  (predict for XP_001698672.1)
Subcellular
localization
TargetP
chlo 5,  mito 4  (predict for XP_001698672.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_04g214150v5
ath-u.5
for
THI1
gma-u.5
for
100788953
gma-u.5
for
100794288
gma-u.5
for
SC-04
sly-u.5
for
101257192
osa-u.5
for
4343443
zma-u.5
for
542715
bra-r.6
for
103851941
bra-r.6
for
103844930
bra-r.6
for
103857026
vvi-u.5
for
THI1-1
vvi-u.5
for
THI1-2
ppo-u.5
for
7470933
ppo-u.5
for
7479083
ppo-u.5
for
7485534
mtr-u.5
for
25485243
mtr-u.5
for
11446281
tae-r.2
for
123148177
tae-r.2
for
123066078
tae-r.2
for
123160697
hvu-r.1
for
123408874
ghi-r.1
for
107928645
ghi-r.1
for
107917921
ghi-r.1
for
107958248
bna-r.1
for
125601255
bna-r.1
for
106346007
bna-r.1
for
106347311
sbi-r.1
for
8078187
sbi-r.1
for
8063504
sot-r.1
for
102598996
cit-r.1
for
102626594
cit-r.1
for
102629135
bdi-r.1
for
100841709
nta-r.1
for
107798781
nta-r.1
for
107797059


Ortholog ID: 3848
Species cre ath gma gma gma sly osa zma bra bra bra vvi vvi ppo ppo ppo mtr mtr tae tae tae hvu ghi ghi ghi bna bna bna sbi sbi sot cit cit bdi nta nta
Symbol CHLRE_04g214150v5 THI1 LOC100794288 SC-04 SC-03 LOC101257192 LOC4343443 LOC542715 LOC103851941 LOC103844930 LOC103857026 THI1-1 THI1-2 LOC7470933 LOC7479083 LOC7485534 LOC25485243 LOC11446281 LOC123148177 LOC123160697 LOC123169109 LOC123408874 LOC107928645 LOC107917921 LOC107961959 LOC106346007 LOC106347311 LOC106371241 LOC8078187 LOC8063504 LOC102598996 LOC102626594 LOC102629135 LOC100841709 LOC107798781 LOC107797059
Function* uncharacterized protein thiazole biosynthetic enzyme, chloroplast (ARA6) (THI1) (THI4) thiamine thiazole synthase 2, chloroplastic thiamin biosynthetic enzyme thiamin biosynthetic enzyme thiamine thiazole synthase, chloroplastic thiamine thiazole synthase, chloroplastic-like thiamine biosynthesis 2 thiamine thiazole synthase, chloroplastic thiamine thiazole synthase, chloroplastic thiamine thiazole synthase, chloroplastic-like thiamine thiazole synthase 1, chloroplastic-like thiamine thiazole synthase 2, chloroplastic thiamine thiazole synthase, chloroplastic thiamine thiazole synthase 2, chloroplastic thiamine thiazole synthase 2, chloroplastic thiamine thiazole synthase, chloroplastic thiamine thiazole synthase, chloroplastic thiamine thiazole synthase 2, chloroplastic thiamine thiazole synthase 2, chloroplastic thiamine thiazole synthase 2, chloroplastic thiamine thiazole synthase 2, chloroplastic thiamine thiazole synthase, chloroplastic-like thiamine thiazole synthase, chloroplastic thiamine thiazole synthase 2, chloroplastic thiamine thiazole synthase, chloroplastic thiamine thiazole synthase, chloroplastic thiamine thiazole synthase, chloroplastic thiamine thiazole synthase 1, chloroplastic thiamine thiazole synthase 2, chloroplastic thiamine thiazole synthase 1, chloroplastic thiamine thiazole synthase, chloroplastic-like thiamine thiazole synthase 2, chloroplastic thiamine thiazole synthase 2, chloroplastic thiamine thiazole synthase, chloroplastic-like thiamine thiazole synthase, chloroplastic-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre01240 Biosynthesis of cofactors 3
cre00730 Thiamine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00195 Photosynthesis 5
ath01200 Carbon metabolism 3
ath01240 Biosynthesis of cofactors 3
ath00710 Carbon fixation by Calvin cycle 2
ath01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00730 Thiamine metabolism 6
gma01240 Biosynthesis of cofactors 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00730 Thiamine metabolism 6
gma01240 Biosynthesis of cofactors 6
gma00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00730 Thiamine metabolism 6
gma01240 Biosynthesis of cofactors 6
gma00240 Pyrimidine metabolism 3
gma00760 Nicotinate and nicotinamide metabolism 2
gma01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00010 Glycolysis / Gluconeogenesis 3
sly01200 Carbon metabolism 3
sly00620 Pyruvate metabolism 2
sly00500 Starch and sucrose metabolism 2
sly00730 Thiamine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04712 Circadian rhythm - plant 4
osa00730 Thiamine metabolism 2
osa01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00730 Thiamine metabolism 4
bra01240 Biosynthesis of cofactors 4
bra00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00730 Thiamine metabolism 4
bra01240 Biosynthesis of cofactors 4
bra00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00500 Starch and sucrose metabolism 6
bra00730 Thiamine metabolism 4
bra01240 Biosynthesis of cofactors 4
bra00350 Tyrosine metabolism 2
bra00360 Phenylalanine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00500 Starch and sucrose metabolism 5
vvi01240 Biosynthesis of cofactors 4
vvi00730 Thiamine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00730 Thiamine metabolism 3
vvi01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01240 Biosynthesis of cofactors 4
ppo01200 Carbon metabolism 3
ppo00670 One carbon pool by folate 2
ppo03010 Ribosome 2
ppo01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00195 Photosynthesis 2
ppo00196 Photosynthesis - antenna proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00730 Thiamine metabolism 2
mtr01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00730 Thiamine metabolism 6
tae01240 Biosynthesis of cofactors 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00730 Thiamine metabolism 6
tae01240 Biosynthesis of cofactors 6
tae00940 Phenylpropanoid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00730 Thiamine metabolism 6
tae01240 Biosynthesis of cofactors 6
tae00260 Glycine, serine and threonine metabolism 2
tae00350 Tyrosine metabolism 2
tae00360 Phenylalanine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00730 Thiamine metabolism 2
hvu01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00500 Starch and sucrose metabolism 10
ghi00730 Thiamine metabolism 2
ghi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00500 Starch and sucrose metabolism 11
ghi00730 Thiamine metabolism 2
ghi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00730 Thiamine metabolism 4
ghi01240 Biosynthesis of cofactors 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00730 Thiamine metabolism 7
bna01240 Biosynthesis of cofactors 7
bna00906 Carotenoid biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00730 Thiamine metabolism 7
bna01240 Biosynthesis of cofactors 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00730 Thiamine metabolism 7
bna01240 Biosynthesis of cofactors 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04712 Circadian rhythm - plant 4
sbi00730 Thiamine metabolism 3
sbi01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi01240 Biosynthesis of cofactors 4
sbi04712 Circadian rhythm - plant 4
sbi00730 Thiamine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00730 Thiamine metabolism 2
sot01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00730 Thiamine metabolism 2
nta01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00730 Thiamine metabolism 2
nta01240 Biosynthesis of cofactors 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 5724279 835567 100794288 547461 547462 101257192 4343443 542715 103851941 103844930 103857026 100260728 100265774 7470933 7479083 7485534 25485243 11446281 123148177 123160697 123169109 123408874 107928645 107917921 107961959 106346007 106347311 106371241 8078187 8063504 102598996 102626594 102629135 100841709 107798781 107797059
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