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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_16g693700v5   uncharacterized protein 
 ath-u.5   UBC10   ubiquitin-conjugating enzyme 10 
 ath-u.5   UBC28   ubiquitin-conjugating enzyme 28 
 ath-u.5   UBC30   ubiquitin-conjugating enzyme 30 
 gma-u.5   100499891   uncharacterized LOC100499891 
 gma-u.5   100499824   ubiquitin-conjugating enzyme E2 
 gma-u.5   100809895   ubiquitin-conjugating enzyme E2 10 
 sly-u.5   UBC   ubiquitin conjugating enzyme E2 
 sly-u.5   101264951   ubiquitin-conjugating enzyme E2 28 
 sly-u.5   101260872   ubiquitin-conjugating enzyme E2 28 
 osa-u.5   4328940   ubiquitin-conjugating enzyme E2 5B-like 
 osa-u.5   4341133   ubiquitin-conjugating enzyme E2-17 kDa 
 zma-u.5   100285413   uncharacterized LOC100285413 
 zma-u.5   103651070   ubiquitin-conjugating enzyme E2-17 kDa-like 
 zma-u.5   100286223   uncharacterized LOC100286223 
 vvi-u.5   100232965   ubiquitin-conjugating enzyme E2-17 kDa 
 vvi-u.5   100248397   ubiquitin-conjugating enzyme E2-17 kDa 
 vvi-u.5   100241514   ubiquitin-conjugating enzyme E2 28-like 
 ppo-u.5   18103563   ubiquitin-conjugating enzyme E2-17 kDa 
 ppo-u.5   7494655   ubiquitin-conjugating enzyme E2-17 kDa 
 ppo-u.5   7497821   ubiquitin-conjugating enzyme E2-17 kDa 
 mtr-u.5   11420397   ubiquitin-conjugating enzyme E2-17 kDa 
 mtr-u.5   11432845   ubiquitin-conjugating enzyme E2-17 kDa 
 mtr-u.5   11436401   ubiquitin-conjugating enzyme E2-17 kDa 

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Top 50 coexpressed genes to CHLRE_16g693700v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_16g693700v5 (cre-r.1 coexpression data)

CoexMap"5724909"


creCHLRE_16g693700v5 | Entrez gene ID : 5724909    
Species cre ath gma sly osa zma vvi ppo mtr sbi nta bra hvu cit bdi sot tae bna ghi
Paralog 1 3 3 3 2 3 3 3 3 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG cre03083 [list] [network] Polycomb repressive complex (13 genes)
cre04120 [list] [network] Ubiquitin mediated proteolysis (48 genes)
cre04141 [list] [network] Protein processing in endoplasmic reticulum (76 genes)
GO BP
GO:0000209 [list] [network] protein polyubiquitination  (40 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (1576 genes)  IEA  
GO MF
GO:0061631 [list] [network] ubiquitin conjugating enzyme activity  (9 genes)  IEA  
Protein XP_001699308.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  cyto_nucl 4,  cyto 2,  plas 1,  golg_plas 1  (predict for XP_001699308.1)
Subcellular
localization
TargetP
other 8  (predict for XP_001699308.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_16g693700v5

.
ath-u.5
for
UBC10

.
ath-u.5
for
UBC28

.
ath-u.5
for
UBC30

.
gma-u.5
for
100499891

.
gma-u.5
for
100499824

.
gma-u.5
for
100809895

.
sly-u.5
for
UBC

.
sly-u.5
for
101264951

.
sly-u.5
for
101260872

.
osa-u.5
for
4328940

.
osa-u.5
for
4341133

.
zma-u.5
for
100285413

.
zma-u.5
for
103651070

.
zma-u.5
for
100286223

.
vvi-u.5
for
100232965

.
vvi-u.5
for
100248397

.
vvi-u.5
for
100241514

.
ppo-u.5
for
18103563

.
ppo-u.5
for
7494655

.
ppo-u.5
for
7497821

.
mtr-u.5
for
11420397

.
mtr-u.5
for
11432845

.
mtr-u.5
for
11436401

.


Ortholog ID: 152
Species ath ath gma gma sly sly osa osa zma zma bra bra vvi vvi ppo ppo mtr mtr tae tae hvu hvu ghi ghi bna bna cre cre sbi sbi sot sot cit cit bdi bdi nta nta
Symbol UBC29 UBC11 LOC100527105 LOC100305945 LOC101264951 LOC101249087 LOC4346639 LOC4327450 LOC100286223 LOC103654927 LOC103860482 LOC103852040 LOC100232965 LOC100248604 LOC18103563 LOC7489805 LOC11437634 LOC25501549 LOC123116053 LOC123137059 LOC123444007 LOC123398194 LOC107947268 LOC107914507 LOC111213058 LOC106387472 CHLRE_06g292800v5 CHLRE_16g693700v5 LOC110433794 LOC8055304 LOC102599431 LOC102595854 LOC102611214 LOC102625059 LOC100833541 LOC100838161 LOC107804942 LOC107767831
Function* ubiquitin-conjugating enzyme 29 ubiquitin-conjugating enzyme 11 putative ubiquitin-conjugating enzyme E2 uncharacterized LOC100305945 ubiquitin-conjugating enzyme E2 28 ubiquitin-conjugating enzyme E2-17 kDa ubiquitin-conjugating enzyme E2-17 kDa ubiquitin-conjugating enzyme E2-17 kDa uncharacterized LOC100286223 ubiquitin-conjugating enzyme E2 28-like ubiquitin-conjugating enzyme E2 29 ubiquitin-conjugating enzyme E2 10 ubiquitin-conjugating enzyme E2-17 kDa ubiquitin-conjugating enzyme E2 28 ubiquitin-conjugating enzyme E2-17 kDa ubiquitin-conjugating enzyme E2 10 ubiquitin-conjugating enzyme E2-17 kDa ubiquitin-conjugating enzyme E2 10 ubiquitin-conjugating enzyme E2 28 ubiquitin-conjugating enzyme E2-17 kDa ubiquitin-conjugating enzyme E2 5A ubiquitin-conjugating enzyme E2 28-like ubiquitin-conjugating enzyme E2 28 ubiquitin-conjugating enzyme E2-17 kDa ubiquitin-conjugating enzyme E2 10-like ubiquitin-conjugating enzyme E2 10 uncharacterized protein uncharacterized protein ubiquitin-conjugating enzyme E2 5A ubiquitin-conjugating enzyme E2-17 kDa ubiquitin-conjugating enzyme E2 10-like ubiquitin-conjugating enzyme E2 28 ubiquitin-conjugating enzyme E2 28 ubiquitin-conjugating enzyme E2-17 kDa ubiquitin-conjugating enzyme E2 28 ubiquitin-conjugating enzyme E2-17 kDa SUMO-conjugating enzyme UBC9 ubiquitin-conjugating enzyme E2 28
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04136 Autophagy - other 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04120 Ubiquitin mediated proteolysis 6
gma04141 Protein processing in endoplasmic reticulum 6
gma03083 Polycomb repressive complex 4
gma04144 Endocytosis 3
gma04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04120 Ubiquitin mediated proteolysis 5
gma04141 Protein processing in endoplasmic reticulum 3
gma04130 SNARE interactions in vesicular transport 3
gma03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04141 Protein processing in endoplasmic reticulum 4
sly04120 Ubiquitin mediated proteolysis 3
sly03060 Protein export 2
sly04145 Phagosome 2
sly03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04141 Protein processing in endoplasmic reticulum 5
sly04120 Ubiquitin mediated proteolysis 3
sly04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00190 Oxidative phosphorylation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03083 Polycomb repressive complex 3
zma04120 Ubiquitin mediated proteolysis 2
zma04141 Protein processing in endoplasmic reticulum 2
zma03250 Viral life cycle - HIV-1 2
zma03272 Virion - Hepatitis viruses 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03083 Polycomb repressive complex 2
bra04120 Ubiquitin mediated proteolysis 2
bra04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04120 Ubiquitin mediated proteolysis 6
vvi04141 Protein processing in endoplasmic reticulum 4
vvi03083 Polycomb repressive complex 3
vvi00561 Glycerolipid metabolism 2
vvi00564 Glycerophospholipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00620 Pyruvate metabolism 2
vvi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04120 Ubiquitin mediated proteolysis 3
ppo01212 Fatty acid metabolism 2
ppo03083 Polycomb repressive complex 2
ppo04141 Protein processing in endoplasmic reticulum 2
ppo04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04141 Protein processing in endoplasmic reticulum 5
ppo03083 Polycomb repressive complex 2
ppo04120 Ubiquitin mediated proteolysis 2
ppo03013 Nucleocytoplasmic transport 2
ppo00020 Citrate cycle (TCA cycle) 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04120 Ubiquitin mediated proteolysis 3
mtr04141 Protein processing in endoplasmic reticulum 3
mtr00190 Oxidative phosphorylation 2
mtr04144 Endocytosis 2
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 5
mtr04120 Ubiquitin mediated proteolysis 2
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03083 Polycomb repressive complex 3
tae04120 Ubiquitin mediated proteolysis 3
tae04141 Protein processing in endoplasmic reticulum 3
tae04626 Plant-pathogen interaction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04120 Ubiquitin mediated proteolysis 7
tae03083 Polycomb repressive complex 6
tae04141 Protein processing in endoplasmic reticulum 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00520 Amino sugar and nucleotide sugar metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03083 Polycomb repressive complex 2
ghi04120 Ubiquitin mediated proteolysis 2
ghi04141 Protein processing in endoplasmic reticulum 2
ghi04144 Endocytosis 2
ghi04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04120 Ubiquitin mediated proteolysis 9
ghi03083 Polycomb repressive complex 8
ghi04141 Protein processing in endoplasmic reticulum 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03083 Polycomb repressive complex 4
bna04120 Ubiquitin mediated proteolysis 4
bna04141 Protein processing in endoplasmic reticulum 4
bna04144 Endocytosis 2
bna00630 Glyoxylate and dicarboxylate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04144 Endocytosis 4
bna03083 Polycomb repressive complex 4
bna04120 Ubiquitin mediated proteolysis 4
bna04141 Protein processing in endoplasmic reticulum 4
bna00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03030 DNA replication 2
cre03420 Nucleotide excision repair 2
cre03430 Mismatch repair 2
cre03440 Homologous recombination 2
cre03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre04120 Ubiquitin mediated proteolysis 5
cre03083 Polycomb repressive complex 2
cre04141 Protein processing in endoplasmic reticulum 2
cre04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03083 Polycomb repressive complex 3
sbi04120 Ubiquitin mediated proteolysis 3
sbi04141 Protein processing in endoplasmic reticulum 3
sbi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04120 Ubiquitin mediated proteolysis 4
sbi03083 Polycomb repressive complex 3
sbi04141 Protein processing in endoplasmic reticulum 3
sbi01230 Biosynthesis of amino acids 2
sbi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03083 Polycomb repressive complex 2
sot04120 Ubiquitin mediated proteolysis 2
sot04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03083 Polycomb repressive complex 2
sot04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04141 Protein processing in endoplasmic reticulum 3
cit03083 Polycomb repressive complex 2
cit04120 Ubiquitin mediated proteolysis 2
cit04130 SNARE interactions in vesicular transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03050 Proteasome 5
cit00230 Purine metabolism 2
cit00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04120 Ubiquitin mediated proteolysis 4
bdi04141 Protein processing in endoplasmic reticulum 3
bdi03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00600 Sphingolipid metabolism 2
nta04382 Cornified envelope formation 2
nta03013 Nucleocytoplasmic transport 2
nta04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04120 Ubiquitin mediated proteolysis 8
nta04141 Protein processing in endoplasmic reticulum 6
nta03083 Polycomb repressive complex 4
nta00562 Inositol phosphate metabolism 2
nta00564 Glycerophospholipid metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 816175 820016 100527105 100305945 101264951 101249087 4346639 4327450 100286223 103654927 103860482 103852040 100232965 100248604 18103563 7489805 11437634 25501549 123116053 123137059 123444007 123398194 107947268 107914507 111213058 106387472 5727147 5724909 110433794 8055304 102599431 102595854 102611214 102625059 100833541 100838161 107804942 107767831
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