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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_02g100000v5   uncharacterized protein 
 ath-u.5   RPA2   replicon protein A2 
 ath-u.5   RPA32B   Replication protein A, subunit RPA32 
 gma-u.5   100782819   replication protein A 32 kDa subunit B 
 gma-u.5   100789756   replication protein A 32 kDa subunit A 
 gma-u.5   100802512   replication protein A 32 kDa subunit A 
 sly-u.5   RPA32a   replication protein A 
 sly-u.5   RPA32b   replication protein A 32 kDa subunit B 
 osa-u.5   4330068   replication protein A 32 kDa subunit B-like 
 osa-u.5   4331236   replication protein A 32 kDa subunit A-like 
 zma-u.5   103627452   replication protein A 32 kDa subunit B 
 zma-u.5   100272286   uncharacterized LOC100272286 
 vvi-u.5   100254758   replication protein A 32 kDa subunit B 
 ppo-u.5   7488964   replication protein A 32 kDa subunit B 
 mtr-u.5   25481878   replication protein A 32 kDa subunit A 
 mtr-u.5   11446020   replication protein A 32 kDa subunit B 

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Top 50 coexpressed genes to CHLRE_02g100000v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_02g100000v5 (cre-r.1 coexpression data)

CoexMap"5725571"


creCHLRE_02g100000v5 | Entrez gene ID : 5725571      
Species cre ath gma sly osa zma vvi ppo mtr sbi nta bra hvu cit bdi sot tae bna ghi
Paralog 1 2 3 2 2 2 1 1 2 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG cre03030 [list] [network] DNA replication (30 genes)
cre03420 [list] [network] Nucleotide excision repair (42 genes)
cre03430 [list] [network] Mismatch repair (15 genes)
cre03440 [list] [network] Homologous recombination (15 genes)
cre03460 [list] [network] Fanconi anemia pathway (16 genes)
GO BP
GO:0006289 [list] [network] nucleotide-excision repair  (28 genes)  IEA  
GO:0000724 [list] [network] double-strand break repair via homologous recombination  (82 genes)  IEA  
GO:0006260 [list] [network] DNA replication  (93 genes)  IEA  
GO CC
GO:0000781 [list] [network] chromosome, telomeric region  (2 genes)  IEA  
GO:0005662 [list] [network] DNA replication factor A complex  (3 genes)  IEA  
GO:0035861 [list] [network] site of double-strand break  (11 genes)  IEA  
GO:0005634 [list] [network] nucleus  (1576 genes)  IEA  
GO MF
GO:0003677 [list] [network] DNA binding  (670 genes)  IEA  
Protein XP_001699819.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 3,  chlo 2,  cyto 2,  mito 1,  cysk_nucl 1,  cyto_pero 1,  cyto_plas 1  (predict for XP_001699819.1)
Subcellular
localization
TargetP
other 7  (predict for XP_001699819.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_02g100000v5

.
ath-u.5
for
RPA2

.
ath-u.5
for
RPA32B

.
gma-u.5
for
100782819

.
gma-u.5
for
100789756

.
gma-u.5
for
100802512

.
sly-u.5
for
RPA32a

.
sly-u.5
for
RPA32b

.
osa-u.5
for
4330068

.
osa-u.5
for
4331236

.
zma-u.5
for
103627452

.
zma-u.5
for
100272286

.
vvi-u.5
for
100254758

.
ppo-u.5
for
7488964

.
mtr-u.5
for
25481878

.
mtr-u.5
for
11446020

.


Ortholog ID: 2882
Species ath ath gma gma sly sly osa osa zma zma bra bra vvi ppo mtr mtr tae tae hvu hvu ghi ghi bna bna cre sbi sbi sot sot cit cit bdi bdi nta nta
Symbol RPA2 RPA32B LOC100802512 LOC100782819 RPA32a RPA32b LOC4330068 LOC4331236 LOC100272286 LOC103627452 LOC103843883 LOC103864559 LOC100254758 LOC18100764 LOC11446020 LOC25481878 LOC123137578 LOC123129156 LOC123403096 LOC123402933 LOC107902799 LOC107942736 LOC106449922 LOC106449932 CHLRE_02g100000v5 LOC110434628 LOC8086154 LOC102587963 LOC102590057 LOC102610707 LOC102610567 LOC100821528 LOC100828397 LOC107803907 LOC107761439
Function* replicon protein A2 Replication protein A, subunit RPA32 replication protein A 32 kDa subunit A replication protein A 32 kDa subunit B replication protein A replication protein A 32 kDa subunit B replication protein A 32 kDa subunit B-like replication protein A 32 kDa subunit A-like uncharacterized LOC100272286 replication protein A 32 kDa subunit B replication protein A 32 kDa subunit B replication protein A 32 kDa subunit A replication protein A 32 kDa subunit B replication protein A 32 kDa subunit A replication protein A 32 kDa subunit B replication protein A 32 kDa subunit A replication protein A 32 kDa subunit B replication protein A 32 kDa subunit A replication protein A 32 kDa subunit A-like replication protein A 32 kDa subunit B-like replication protein A 32 kDa subunit A replication protein A 32 kDa subunit B replication protein A 32 kDa subunit A replication protein A 32 kDa subunit A-like uncharacterized protein replication protein A 32 kDa subunit B-like replication protein A 32 kDa subunit B replication protein A 32 kDa subunit B replication protein A 32 kDa subunit A replication protein A 32 kDa subunit A replication protein A 32 kDa subunit B replication protein A 32 kDa subunit B replication protein A 32 kDa subunit A replication protein A 32 kDa subunit A replication protein A 32 kDa subunit A-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03030 DNA replication 9
ath03420 Nucleotide excision repair 5
ath03430 Mismatch repair 5
ath03440 Homologous recombination 4
ath03460 Fanconi anemia pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03030 DNA replication 8
ath03420 Nucleotide excision repair 5
ath03430 Mismatch repair 5
ath03440 Homologous recombination 4
ath03460 Fanconi anemia pathway 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03030 DNA replication 8
gma03420 Nucleotide excision repair 7
gma03430 Mismatch repair 7
gma03440 Homologous recombination 5
gma03460 Fanconi anemia pathway 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03050 Proteasome 4
gma03030 DNA replication 2
gma03420 Nucleotide excision repair 2
gma03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03030 DNA replication 11
sly03420 Nucleotide excision repair 2
sly03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03030 DNA replication 3
sly03440 Homologous recombination 2
sly03410 Base excision repair 2
sly03450 Non-homologous end-joining 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00650 Butanoate metabolism 3
osa01200 Carbon metabolism 3
osa04146 Peroxisome 3
osa03420 Nucleotide excision repair 2
osa00071 Fatty acid degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03030 DNA replication 11
osa03440 Homologous recombination 3
osa03420 Nucleotide excision repair 3
osa03430 Mismatch repair 2
osa03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03030 DNA replication 11
zma00240 Pyrimidine metabolism 2
zma01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03013 Nucleocytoplasmic transport 5
zma03008 Ribosome biogenesis in eukaryotes 4
zma03250 Viral life cycle - HIV-1 4
zma03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03030 DNA replication 4
bra03440 Homologous recombination 4
bra03420 Nucleotide excision repair 3
bra03430 Mismatch repair 3
bra03460 Fanconi anemia pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03030 DNA replication 10
bra03420 Nucleotide excision repair 3
bra03430 Mismatch repair 3
bra03440 Homologous recombination 2
bra03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03430 Mismatch repair 7
vvi03030 DNA replication 6
vvi03420 Nucleotide excision repair 6
vvi03410 Base excision repair 5
vvi03440 Homologous recombination 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03030 DNA replication 9
ppo03430 Mismatch repair 3
ppo00230 Purine metabolism 2
ppo00240 Pyrimidine metabolism 2
ppo00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03030 DNA replication 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03030 DNA replication 3
mtr03010 Ribosome 3
mtr03420 Nucleotide excision repair 2
mtr03430 Mismatch repair 2
mtr03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03030 DNA replication 3
tae03420 Nucleotide excision repair 3
tae03430 Mismatch repair 3
tae03440 Homologous recombination 3
tae03460 Fanconi anemia pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03030 DNA replication 14
tae03420 Nucleotide excision repair 5
tae03430 Mismatch repair 4
tae03440 Homologous recombination 4
tae03460 Fanconi anemia pathway 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03050 Proteasome 4
hvu04141 Protein processing in endoplasmic reticulum 2
hvu03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03030 DNA replication 9
ghi03420 Nucleotide excision repair 7
ghi03430 Mismatch repair 7
ghi03410 Base excision repair 4
ghi03440 Homologous recombination 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03030 DNA replication 7
ghi03420 Nucleotide excision repair 7
ghi03430 Mismatch repair 7
ghi03410 Base excision repair 4
ghi03440 Homologous recombination 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03030 DNA replication 8
bna03420 Nucleotide excision repair 6
bna03430 Mismatch repair 6
bna03410 Base excision repair 4
bna03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03030 DNA replication 8
bna03420 Nucleotide excision repair 6
bna03430 Mismatch repair 6
bna03410 Base excision repair 4
bna03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03030 DNA replication 6
cre03420 Nucleotide excision repair 4
cre03430 Mismatch repair 4
cre03410 Base excision repair 2
cre03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03082 ATP-dependent chromatin remodeling 2
sbi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03030 DNA replication 3
sot00230 Purine metabolism 2
sot00240 Pyrimidine metabolism 2
sot00480 Glutathione metabolism 2
sot01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03030 DNA replication 10
sot03420 Nucleotide excision repair 2
sot03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 2
cit03030 DNA replication 2
cit03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03030 DNA replication 8
cit03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03410 Base excision repair 2
bdi03030 DNA replication 2
bdi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03030 DNA replication 9
bdi03420 Nucleotide excision repair 2
bdi03430 Mismatch repair 2
bdi03440 Homologous recombination 2
bdi03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 4
nta03030 DNA replication 2
nta03420 Nucleotide excision repair 2
nta03430 Mismatch repair 2
nta03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00062 Fatty acid elongation 4
nta04626 Plant-pathogen interaction 4
nta03020 RNA polymerase 3
nta04081 Hormone signaling 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 816985 821187 100802512 100782819 101244966 101247082 4330068 4331236 100272286 103627452 103843883 103864559 100254758 18100764 11446020 25481878 123137578 123129156 123403096 123402933 107902799 107942736 106449922 106449932 5725571 110434628 8086154 102587963 102590057 102610707 102610567 100821528 100828397 107803907 107761439
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