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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_02g095400v5   uncharacterized protein 
 ath-u.5   AT3G15460   Ribosomal RNA processing Brix domain protein 
 ath-u.5   AT1G52930   Ribosomal RNA processing Brix domain protein 
 gma-u.5   100797218   ribosome biogenesis protein BRX1 homolog 1 
 gma-u.5   100797887   ribosome biogenesis protein BRX1-like 
 gma-u.5   100796135   ribosome biogenesis protein BRX1-like 
 sly-u.5   101259142   ribosome biogenesis protein BRX1 homolog 1 
 osa-u.5   4329832   ribosome biogenesis protein BRX1 homolog 2 
 zma-u.5   100216595   uncharacterized LOC100216595 
 zma-u.5   100284070   uncharacterized LOC100284070 
 vvi-u.5   100247988   ribosome biogenesis protein BRX1 homolog 2 
 ppo-u.5   7460836   ribosome biogenesis protein BRX1 homolog 1 
 ppo-u.5   18095612   ribosome biogenesis protein BRX1 homolog 2 
 mtr-u.5   11406501   ribosome biogenesis protein BRX1 homolog 2 
 mtr-u.5   25481942   ribosome biogenesis protein BRX1 homolog 2 

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Top 50 coexpressed genes to CHLRE_02g095400v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_02g095400v5 (cre-r.1 coexpression data)

CoexMap"5725615"


creCHLRE_02g095400v5 | Entrez gene ID : 5725615      
Species cre ath gma sly osa zma vvi ppo mtr hvu sot tae nta bra cit ghi bna bdi sbi
Paralog 1 2 3 1 1 2 1 2 2 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0000027 [list] [network] ribosomal large subunit assembly  (20 genes)  IEA  
GO:0006364 [list] [network] rRNA processing  (218 genes)  IEA  
GO CC
GO:0005730 [list] [network] nucleolus  (152 genes)  IEA  
GO MF
GO:0019843 [list] [network] rRNA binding  (36 genes)  IEA  
Protein XP_001699854.2 [sequence] [blastp]
XP_042927255.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9  (predict for XP_001699854.2)
nucl 8,  cyto 1  (predict for XP_042927255.1)
Subcellular
localization
TargetP
other 8  (predict for XP_001699854.2)
other 8  (predict for XP_042927255.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_02g095400v5

.
ath-u.5
for
AT3G15460

.
ath-u.5
for
AT1G52930

.
gma-u.5
for
100797218

.
gma-u.5
for
100797887

.
gma-u.5
for
100796135

.
sly-u.5
for
101259142

.
osa-u.5
for
4329832

.
zma-u.5
for
100216595

.
zma-u.5
for
100284070

.
vvi-u.5
for
100247988

.
ppo-u.5
for
7460836

.
ppo-u.5
for
18095612

.
mtr-u.5
for
11406501

.
mtr-u.5
for
25481942

.


Ortholog ID: 4907
Species ath ath gma gma sly osa zma zma bra bra vvi ppo ppo mtr mtr tae tae hvu hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol AT3G15460 AT1G52930 LOC100797218 LOC100797887 LOC101259142 LOC4329832 LOC100216595 LOC100284070 LOC103859624 LOC103869918 LOC100247988 LOC7460836 LOC18095612 LOC11406501 LOC25481942 LOC123046671 LOC123190387 LOC123427864 LOC123402981 LOC107929693 LOC107886736 LOC106405553 LOC106401210 CHLRE_02g095400v5 LOC8055434 LOC102594267 LOC102615253 LOC100822978 LOC107814952 LOC107827671
Function* Ribosomal RNA processing Brix domain protein Ribosomal RNA processing Brix domain protein ribosome biogenesis protein BRX1 homolog 1 ribosome biogenesis protein BRX1-like ribosome biogenesis protein BRX1 homolog 1 ribosome biogenesis protein BRX1 homolog 2 uncharacterized LOC100216595 uncharacterized LOC100284070 ribosome biogenesis protein BRX1 homolog 1 ribosome biogenesis protein BRX1 homolog 2 ribosome biogenesis protein BRX1 homolog 2 ribosome biogenesis protein BRX1 homolog 1 ribosome biogenesis protein BRX1 homolog 2 ribosome biogenesis protein BRX1 homolog 2 ribosome biogenesis protein BRX1 homolog 2 ribosome biogenesis protein BRX1 homolog 2 ribosome biogenesis protein BRX1 homolog 2 ribosome biogenesis protein BRX1 homolog 2-like ribosome biogenesis protein BRX1 homolog 1-like ribosome biogenesis protein BRX1 homolog 1 ribosome biogenesis protein BRX1 homolog 1 ribosome biogenesis protein BRX1 homolog 2-like ribosome biogenesis protein BRX1 homolog 2 uncharacterized protein ribosome biogenesis protein BRX1 homolog 1 ribosome biogenesis protein BRX1 homolog ribosome biogenesis protein BRX1 homolog 1-like ribosome biogenesis protein BRX1 homolog 1 ribosome biogenesis protein BRX1 homolog 2-like ribosome biogenesis protein BRX1 homolog 1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 5
zma03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 13
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 8
ppo03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 8
ppo03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 3
mtr03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 7
hvu03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 3
ghi03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 7
sbi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 8
bdi03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 8
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 820785 841726 100797218 100797887 101259142 4329832 100216595 100284070 103859624 103869918 100247988 7460836 18095612 11406501 25481942 123046671 123190387 123427864 123402981 107929693 107886736 106405553 106401210 5725615 8055434 102594267 102615253 100822978 107814952 107827671
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