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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_01g007651v5   uncharacterized protein 
 ath-u.5   AT3G04820   Pseudouridine synthase family protein 
 gma-u.5   100795469   multisubstrate pseudouridine synthase 7 
 gma-u.5   100780786   multisubstrate pseudouridine synthase 7 
 sly-u.5   101266072   multisubstrate pseudouridine synthase 7 
 osa-u.5   4324714   uncharacterized LOC4324714 
 osa-u.5   9272465   multisubstrate pseudouridine synthase 7 
 zma-u.5   100280058   Pseudouridine synthase family protein 
 zma-u.5   100191435   Pseudouridine synthase family protein 
 vvi-u.5   100260502   uncharacterized LOC100260502 
 ppo-u.5   18098950   multisubstrate pseudouridine synthase 7 
 mtr-u.5   11429618   multisubstrate pseudouridine synthase 7 

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Top 50 coexpressed genes to CHLRE_01g007651v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_01g007651v5 (cre-r.1 coexpression data)

CoexMap"5725828"


creCHLRE_01g007651v5 | Entrez gene ID : 5725828    
Species cre ath gma sly osa zma vvi ppo mtr sbi nta bra hvu cit bdi sot tae bna ghi
Paralog 1 1 2 1 2 2 1 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0001522 [list] [network] pseudouridine synthesis  (29 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (1576 genes)  IEA  
GO MF
GO:0009982 [list] [network] pseudouridine synthase activity  (23 genes)  IEA  
GO:0003723 [list] [network] RNA binding  (670 genes)  IEA  
Protein XP_042928145.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 5,  nucl 4  (predict for XP_042928145.1)
Subcellular
localization
TargetP
other 8,  mito 4  (predict for XP_042928145.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_01g007651v5

.
ath-u.5
for
AT3G04820

.
gma-u.5
for
100795469

.
gma-u.5
for
100780786

.
sly-u.5
for
101266072

.
osa-u.5
for
4324714

.
osa-u.5
for
9272465

.
zma-u.5
for
100280058

.
zma-u.5
for
100191435

.
vvi-u.5
for
100260502

.
ppo-u.5
for
18098950

.
mtr-u.5
for
11429618

.


Ortholog ID: 6536
Species ath gma gma sly osa osa zma zma bra vvi ppo mtr tae tae hvu hvu ghi ghi bna bna cre sbi sbi sot cit bdi bdi nta nta
Symbol AT3G04820 LOC100795469 LOC100780786 LOC101266072 LOC4324714 LOC9272465 LOC100191435 LOC100280058 LOC103859060 LOC100260502 LOC18098950 LOC11429618 LOC123139365 LOC123079330 LOC123444534 LOC123447678 LOC107926806 LOC107888921 LOC106452806 LOC106438997 CHLRE_01g007651v5 LOC110430734 LOC8063519 LOC102592116 LOC102614609 LOC100845387 LOC100838988 LOC107776357 LOC107788228
Function* Pseudouridine synthase family protein multisubstrate pseudouridine synthase 7 multisubstrate pseudouridine synthase 7 multisubstrate pseudouridine synthase 7 uncharacterized LOC4324714 multisubstrate pseudouridine synthase 7 Pseudouridine synthase family protein Pseudouridine synthase family protein multisubstrate pseudouridine synthase 7 uncharacterized LOC100260502 multisubstrate pseudouridine synthase 7 multisubstrate pseudouridine synthase 7 pseudouridylate synthase 7 homolog pseudouridylate synthase 7 homolog pseudouridylate synthase 7 homolog multisubstrate pseudouridine synthase 7 pseudouridylate synthase 7 homolog pseudouridylate synthase 7 homolog multisubstrate pseudouridine synthase 7-like pseudouridylate synthase 7 homolog uncharacterized protein uncharacterized LOC110430734 pseudouridylate synthase 7 homolog multisubstrate pseudouridine synthase 7 multisubstrate pseudouridine synthase 7 pseudouridylate synthase 7 homolog pseudouridylate synthase 7 homolog multisubstrate pseudouridine synthase 7 multisubstrate pseudouridine synthase 7
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00970 Aminoacyl-tRNA biosynthesis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03018 RNA degradation 2
osa03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00970 Aminoacyl-tRNA biosynthesis 4
zma03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 2
vvi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00970 Aminoacyl-tRNA biosynthesis 4
mtr03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 2
ghi00260 Glycine, serine and threonine metabolism 2
ghi00460 Cyanoamino acid metabolism 2
ghi00630 Glyoxylate and dicarboxylate metabolism 2
ghi00670 One carbon pool by folate 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03008 Ribosome biogenesis in eukaryotes 6
cit03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 4
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 819642 100795469 100780786 101266072 4324714 9272465 100191435 100280058 103859060 100260502 18098950 11429618 123139365 123079330 123444534 123447678 107926806 107888921 106452806 106438997 5725828 110430734 8063519 102592116 102614609 100845387 100838988 107776357 107788228
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