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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_07g316850v5   uncharacterized protein 
 ath-u.5   MCM4   Minichromosome maintenance (MCM2/3/5) family protein 
 gma-u.5   100805788   DNA replication licensing factor MCM4 
 gma-u.5   100782586   DNA replication licensing factor MCM4 
 sly-u.5   101264867   DNA replication licensing factor MCM4 
 osa-u.5   107275673   DNA replication licensing factor MCM4-like 
 zma-u.5   100281587   DNA replication licensing factor mcm4 
 zma-u.5   100383139   DNA replication licensing factor MCM4 
 vvi-u.5   100262415   DNA replication licensing factor MCM4 
 ppo-u.5   7456349   DNA replication licensing factor MCM4 
 mtr-u.5   11440570   DNA replication licensing factor MCM4 

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Top 50 coexpressed genes to CHLRE_07g316850v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_07g316850v5 (cre-r.1 coexpression data)

CoexMap"5726541"


creCHLRE_07g316850v5 | Entrez gene ID : 5726541    
Species cre ath gma sly osa zma vvi ppo mtr sbi nta bra hvu cit bdi sot tae bna ghi
Paralog 1 1 2 1 1 2 1 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG cre03030 [list] [network] DNA replication (30 genes)
GO BP
GO:1902975 [list] [network] mitotic DNA replication initiation  (5 genes)  IEA  
GO:0000727 [list] [network] double-strand break repair via break-induced replication  (10 genes)  IEA  
GO:0006271 [list] [network] DNA strand elongation involved in DNA replication  (14 genes)  IEA  
GO:0006260 [list] [network] DNA replication  (93 genes)  IEA  
GO CC
GO:0042555 [list] [network] MCM complex  (8 genes)  IEA  
GO:0005634 [list] [network] nucleus  (1576 genes)  IEA  
GO MF
GO:0017116 [list] [network] single-stranded DNA helicase activity  (9 genes)  IEA  
GO:0003697 [list] [network] single-stranded DNA binding  (46 genes)  IEA  
GO:0005524 [list] [network] ATP binding  (1223 genes)  IEA  
Protein XP_042922458.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  chlo 1,  plas 1,  E.R. 1,  E.R._plas 1  (predict for XP_042922458.1)
Subcellular
localization
TargetP
other 8  (predict for XP_042922458.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_07g316850v5

.
ath-u.5
for
MCM4

.
gma-u.5
for
100805788

.
gma-u.5
for
100782586

.
sly-u.5
for
101264867

.
osa-u.5
for
107275673

.
zma-u.5
for
100281587

.
zma-u.5
for
100383139

.
vvi-u.5
for
100262415

.
ppo-u.5
for
7456349

.
mtr-u.5
for
11440570

.


Ortholog ID: 9384
Species ath gma gma sly osa zma zma bra vvi ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol MCM4 LOC100805788 LOC100782586 LOC101264867 LOC107275673 LOC100383139 LOC100281587 LOC103860462 LOC100262415 LOC7456349 LOC11440570 LOC123061267 LOC123069799 LOC123443682 LOC107913539 LOC107920789 LOC106439842 LOC106429437 CHLRE_07g316850v5 LOC8075459 LOC102584896 LOC102619925 LOC100821405 LOC107795484 LOC107799705
Function* Minichromosome maintenance (MCM2/3/5) family protein DNA replication licensing factor MCM4 DNA replication licensing factor MCM4 DNA replication licensing factor MCM4 DNA replication licensing factor MCM4-like DNA replication licensing factor MCM4 DNA replication licensing factor mcm4 DNA replication licensing factor MCM4 DNA replication licensing factor MCM4 DNA replication licensing factor MCM4 DNA replication licensing factor MCM4 DNA replication licensing factor MCM4 DNA replication licensing factor MCM4 DNA replication licensing factor MCM4 DNA replication licensing factor MCM4 DNA replication licensing factor MCM4 DNA replication licensing factor MCM4-like DNA replication licensing factor MCM4 uncharacterized protein DNA replication licensing factor MCM4 DNA replication licensing factor MCM4 DNA replication licensing factor MCM4 DNA replication licensing factor MCM4 DNA replication licensing factor MCM4 DNA replication licensing factor MCM4
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03030 DNA replication 11
ath03410 Base excision repair 2
ath03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03030 DNA replication 14
gma00240 Pyrimidine metabolism 2
gma01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03030 DNA replication 11
gma00240 Pyrimidine metabolism 2
gma01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03030 DNA replication 8
sly03082 ATP-dependent chromatin remodeling 2
sly03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03030 DNA replication 10
osa03420 Nucleotide excision repair 2
osa03430 Mismatch repair 2
osa03440 Homologous recombination 2
osa03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03030 DNA replication 13
zma03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03030 DNA replication 13
zma03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03030 DNA replication 11
bra03420 Nucleotide excision repair 2
bra03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03030 DNA replication 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03030 DNA replication 9
ppo00230 Purine metabolism 2
ppo00240 Pyrimidine metabolism 2
ppo00480 Glutathione metabolism 2
ppo01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03030 DNA replication 10
mtr03410 Base excision repair 2
mtr03420 Nucleotide excision repair 2
mtr03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03030 DNA replication 13
tae03018 RNA degradation 2
tae03410 Base excision repair 2
tae03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03030 DNA replication 14
tae03410 Base excision repair 6
tae03420 Nucleotide excision repair 6
tae03430 Mismatch repair 3
tae03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00270 Cysteine and methionine metabolism 3
hvu00520 Amino sugar and nucleotide sugar metabolism 3
hvu01250 Biosynthesis of nucleotide sugars 3
hvu00020 Citrate cycle (TCA cycle) 2
hvu04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03030 DNA replication 10
ghi00240 Pyrimidine metabolism 2
ghi01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03030 DNA replication 10
ghi00240 Pyrimidine metabolism 2
ghi01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03030 DNA replication 10
bna00270 Cysteine and methionine metabolism 2
bna03410 Base excision repair 2
bna03420 Nucleotide excision repair 2
bna03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03030 DNA replication 10
bna00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03030 DNA replication 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03030 DNA replication 10
sbi03420 Nucleotide excision repair 2
sbi03430 Mismatch repair 2
sbi03440 Homologous recombination 2
sbi03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03030 DNA replication 9
sot03460 Fanconi anemia pathway 4
sot03440 Homologous recombination 3
sot03420 Nucleotide excision repair 2
sot03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03030 DNA replication 7
cit04814 Motor proteins 2
cit00230 Purine metabolism 2
cit00240 Pyrimidine metabolism 2
cit00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03030 DNA replication 8
bdi03440 Homologous recombination 2
bdi03460 Fanconi anemia pathway 2
bdi03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03030 DNA replication 10
nta03410 Base excision repair 2
nta03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03030 DNA replication 15
nta03420 Nucleotide excision repair 3
nta03410 Base excision repair 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 816142 100805788 100782586 101264867 107275673 100383139 100281587 103860462 100262415 7456349 11440570 123061267 123069799 123443682 107913539 107920789 106439842 106429437 5726541 8075459 102584896 102619925 100821405 107795484 107799705
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