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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_02g073900v5   uncharacterized protein 
 ath-u.5   CCD8   carotenoid cleavage dioxygenase 8 
 gma-u.5   100814148   carotenoid cleavage dioxygenase 8 homolog B, chloroplastic 
 gma-u.5   CCD8   carotenoid cleavage dioxygenase 
 sly-u.5   101254620   carotenoid cleavage dioxygenase 8, chloroplastic-like 
 osa-u.5   4326177   carotenoid cleavage dioxygenase 8 homolog B, chloroplastic 
 osa-u.5   4327933   carotenoid cleavage dioxygenase 8 homolog A, chloroplastic-like 
 zma-u.5   100502522   uncharacterized LOC100502522 
 vvi-u.5   100250765   carotenoid cleavage dioxygenase 8 homolog B, chloroplastic 
 ppo-u.5   7462922   carotenoid cleavage dioxygenase 8 homolog B, chloroplastic 
 ppo-u.5   7470743   carotenoid cleavage dioxygenase 8 homolog B, chloroplastic 
 mtr-u.5   11423389   carotenoid cleavage dioxygenase 8 homolog B, chloroplastic 
 mtr-u.5   25498599   carotenoid cleavage dioxygenase 8 homolog B, chloroplastic 

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Top 50 coexpressed genes to CHLRE_02g073900v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_02g073900v5 (cre-r.1 coexpression data)

CoexMap"5727168"


creCHLRE_02g073900v5 | Entrez gene ID : 5727168      
Species cre ath gma sly osa zma vvi ppo mtr sbi nta bra hvu cit bdi sot tae bna ghi
Paralog 1 1 2 1 2 1 1 2 2 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG cre00906 [list] [network] Carotenoid biosynthesis (13 genes)
GO BP
GO:0016121 [list] [network] carotene catabolic process  (9 genes)  IEA  
GO CC
GO:0009507 [list] [network] chloroplast  (224 genes)  IEA  
GO MF
GO:0010436 [list] [network] carotenoid dioxygenase activity  (9 genes)  IEA  
Protein XP_001701620.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 8,  mito 2  (predict for XP_001701620.1)
Subcellular
localization
TargetP
chlo 6,  mito 6  (predict for XP_001701620.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_02g073900v5

.
ath-u.5
for
CCD8

.
gma-u.5
for
100814148

.
gma-u.5
for
CCD8

.
sly-u.5
for
101254620

.
osa-u.5
for
4326177

.
osa-u.5
for
4327933

.
zma-u.5
for
100502522

.
vvi-u.5
for
100250765

.
ppo-u.5
for
7462922

.
ppo-u.5
for
7470743

.
mtr-u.5
for
11423389

.
mtr-u.5
for
25498599

.


Ortholog ID: 4963
Species ath gma gma sly osa osa zma bra vvi ppo ppo mtr mtr tae tae hvu hvu ghi ghi bna bna cre cre sot bdi nta nta
Symbol CCD8 LOC100814148 CCD8 LOC101254620 LOC4326177 LOC4327933 LOC100502522 LOC103850421 LOC100250765 LOC7462922 LOC7470743 LOC11423389 LOC25498599 LOC123065607 LOC123058519 LOC123440243 LOC123441405 LOC107897099 LOC107901528 LOC106371158 LOC106375326 CHLRE_08g365851v5 CHLRE_02g073900v5 LOC102595155 LOC100831734 LOC107821949 LOC107812793
Function* carotenoid cleavage dioxygenase 8 carotenoid cleavage dioxygenase 8 homolog B, chloroplastic carotenoid cleavage dioxygenase carotenoid cleavage dioxygenase 8, chloroplastic-like carotenoid cleavage dioxygenase 8 homolog B, chloroplastic carotenoid cleavage dioxygenase 8 homolog A, chloroplastic-like uncharacterized LOC100502522 carotenoid cleavage dioxygenase 8, chloroplastic carotenoid cleavage dioxygenase 8 homolog B, chloroplastic carotenoid cleavage dioxygenase 8 homolog B, chloroplastic carotenoid cleavage dioxygenase 8 homolog B, chloroplastic carotenoid cleavage dioxygenase 8 homolog B, chloroplastic carotenoid cleavage dioxygenase 8 homolog B, chloroplastic carotenoid cleavage dioxygenase 8 homolog B, chloroplastic carotenoid cleavage dioxygenase 8 homolog B, chloroplastic carotenoid cleavage dioxygenase 8 homolog B, chloroplastic carotenoid cleavage dioxygenase 8 homolog B, chloroplastic-like carotenoid cleavage dioxygenase 8 homolog B, chloroplastic carotenoid cleavage dioxygenase 8 homolog B, chloroplastic carotenoid cleavage dioxygenase 8, chloroplastic-like carotenoid cleavage dioxygenase 8, chloroplastic uncharacterized protein uncharacterized protein carotenoid cleavage dioxygenase 8 homolog B, chloroplastic carotenoid cleavage dioxygenase 8 homolog B, chloroplastic carotenoid cleavage dioxygenase 8 homolog B, chloroplastic carotenoid cleavage dioxygenase 8 homolog B, chloroplastic-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00564 Glycerophospholipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00250 Alanine, aspartate and glutamate metabolism 3
osa00270 Cysteine and methionine metabolism 2
osa01200 Carbon metabolism 2
osa00906 Carotenoid biosynthesis 2
osa01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00904 Diterpenoid biosynthesis 3
zma02010 ABC transporters 2
zma00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00906 Carotenoid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00906 Carotenoid biosynthesis 3
ppo02010 ABC transporters 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00906 Carotenoid biosynthesis 10
mtr00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00906 Carotenoid biosynthesis 5
mtr00904 Diterpenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00906 Carotenoid biosynthesis 3
tae04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04075 Plant hormone signal transduction 7
tae00906 Carotenoid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00906 Carotenoid biosynthesis 2
hvu00910 Nitrogen metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00906 Carotenoid biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00906 Carotenoid biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04075 Plant hormone signal transduction 8
bna00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04075 Plant hormone signal transduction 8
bna00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00900 Terpenoid backbone biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00330 Arginine and proline metabolism 3
bdi00480 Glutathione metabolism 3
bdi04148 Efferocytosis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00906 Carotenoid biosynthesis 4
nta00260 Glycine, serine and threonine metabolism 4
nta00350 Tyrosine metabolism 4
nta00360 Phenylalanine metabolism 4
nta00410 beta-Alanine metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00906 Carotenoid biosynthesis 4
nta00260 Glycine, serine and threonine metabolism 4
nta00350 Tyrosine metabolism 4
nta00360 Phenylalanine metabolism 4
nta00410 beta-Alanine metabolism 4
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 829417 100814148 100794831 101254620 4326177 4327933 100502522 103850421 100250765 7462922 7470743 11423389 25498599 123065607 123058519 123440243 123441405 107897099 107901528 106371158 106375326 5721657 5727168 102595155 100831734 107821949 107812793
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