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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_10g433000v5   uncharacterized protein 
 ath-u.5   EDD1   glycine-tRNA ligase 
 gma-u.5   100787365   glycine--tRNA ligase, chloroplastic/mitochondrial 2 
 sly-u.5   101256217   glycine--tRNA ligase, chloroplastic/mitochondrial 2 
 osa-u.5   4339847   glycine--tRNA ligase, chloroplastic/mitochondrial 2 
 zma-u.5   103638191   glycine--tRNA ligase, chloroplastic/mitochondrial 2 
 vvi-u.5   100246137   glycine--tRNA ligase, chloroplastic/mitochondrial 2 
 ppo-u.5   7486786   glycine--tRNA ligase, chloroplastic/mitochondrial 2 
 mtr-u.5   25500059   glycine--tRNA ligase, chloroplastic/mitochondrial 2 

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Top 50 coexpressed genes to CHLRE_10g433000v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_10g433000v5 (cre-r.1 coexpression data)

CoexMap"5728041"


creCHLRE_10g433000v5 | Entrez gene ID : 5728041      
Species cre ath gma sly osa zma vvi ppo mtr sbi nta bra hvu cit bdi sot tae bna ghi
Paralog 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG cre00970 [list] [network] Aminoacyl-tRNA biosynthesis (65 genes)
GO BP
GO:0006426 [list] [network] glycyl-tRNA aminoacylation  (2 genes)  IEA  
GO CC
GO:0009570 [list] [network] chloroplast stroma  (41 genes)  IEA  
GO:0005739 [list] [network] mitochondrion  (441 genes)  IEA  
GO:0005737 [list] [network] cytoplasm  (2907 genes)  IEA  
GO MF
GO:0004820 [list] [network] glycine-tRNA ligase activity  (2 genes)  IEA  
GO:0005524 [list] [network] ATP binding  (1223 genes)  IEA  
Protein XP_042920072.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 7,  mito 3  (predict for XP_042920072.1)
Subcellular
localization
TargetP
chlo 5  (predict for XP_042920072.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_10g433000v5

.
ath-u.5
for
EDD1

.
gma-u.5
for
100787365

.
sly-u.5
for
101256217

.
osa-u.5
for
4339847

.
zma-u.5
for
103638191

.
vvi-u.5
for
100246137

.
ppo-u.5
for
7486786

.
mtr-u.5
for
25500059

.


Ortholog ID: 10135
Species ath gma sly osa zma bra vvi ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol EDD1 LOC100787365 LOC101256217 LOC4339847 LOC103638191 LOC103830664 LOC100246137 LOC7486786 LOC25500059 LOC123088640 LOC123148994 LOC123413444 LOC107926326 LOC121224102 LOC106353665 LOC106405545 CHLRE_10g433000v5 LOC8066859 LOC102601379 LOC102624803 LOC100842002 LOC107811104 LOC107830076
Function* glycine-tRNA ligase glycine--tRNA ligase, chloroplastic/mitochondrial 2 glycine--tRNA ligase, chloroplastic/mitochondrial 2 glycine--tRNA ligase, chloroplastic/mitochondrial 2 glycine--tRNA ligase, chloroplastic/mitochondrial 2 glycine--tRNA ligase, chloroplastic/mitochondrial 2 glycine--tRNA ligase, chloroplastic/mitochondrial 2 glycine--tRNA ligase, chloroplastic/mitochondrial 2 glycine--tRNA ligase, chloroplastic/mitochondrial 2 glycine--tRNA ligase, chloroplastic/mitochondrial 2 glycine--tRNA ligase, chloroplastic/mitochondrial 2 glycine--tRNA ligase, chloroplastic/mitochondrial 2 glycine--tRNA ligase, chloroplastic/mitochondrial 2 glycine--tRNA ligase, chloroplastic/mitochondrial 2-like glycine--tRNA ligase, chloroplastic/mitochondrial 2 glycine--tRNA ligase, chloroplastic/mitochondrial 2-like uncharacterized protein glycine--tRNA ligase, chloroplastic/mitochondrial 2 glycine--tRNA ligase, chloroplastic/mitochondrial 2 glycine--tRNA ligase, chloroplastic/mitochondrial 2 glycine--tRNA ligase, chloroplastic/mitochondrial 2 glycine--tRNA ligase, chloroplastic/mitochondrial 2 glycine--tRNA ligase, chloroplastic/mitochondrial 2
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00970 Aminoacyl-tRNA biosynthesis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00970 Aminoacyl-tRNA biosynthesis 5
gma03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00970 Aminoacyl-tRNA biosynthesis 7
sly00500 Starch and sucrose metabolism 2
sly00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00970 Aminoacyl-tRNA biosynthesis 12
osa01240 Biosynthesis of cofactors 3
osa00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00970 Aminoacyl-tRNA biosynthesis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00970 Aminoacyl-tRNA biosynthesis 5
mtr03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03018 RNA degradation 7
tae00970 Aminoacyl-tRNA biosynthesis 3
tae03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 6
tae00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00970 Aminoacyl-tRNA biosynthesis 3
hvu03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00970 Aminoacyl-tRNA biosynthesis 4
ghi03060 Protein export 2
ghi00906 Carotenoid biosynthesis 2
ghi00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 6
bna00970 Aminoacyl-tRNA biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00970 Aminoacyl-tRNA biosynthesis 4
bna03018 RNA degradation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03010 Ribosome 8
cre00970 Aminoacyl-tRNA biosynthesis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00970 Aminoacyl-tRNA biosynthesis 4
sbi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 2
nta03440 Homologous recombination 2
nta00230 Purine metabolism 2
nta00051 Fructose and mannose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00340 Histidine metabolism 2
nta01230 Biosynthesis of amino acids 2
nta00970 Aminoacyl-tRNA biosynthesis 2
nta03440 Homologous recombination 2
nta00230 Purine metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 823966 100787365 101256217 4339847 103638191 103830664 100246137 7486786 25500059 123088640 123148994 123413444 107926326 121224102 106353665 106405545 5728041 8066859 102601379 102624803 100842002 107811104 107830076
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