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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_03g182500v5   uncharacterized protein 
 ath-u.5   AT1G67650   SRP72 RNA-binding domain-containing protein 
 ath-u.5   AT1G67680   SRP72 RNA-binding domain-containing protein 
 gma-u.5   100810125   signal recognition particle subunit SRP72 
 gma-u.5   100791472   signal recognition particle subunit SRP72 
 sly-u.5   101255954   uncharacterized LOC101255954 
 osa-u.5   4324904   uncharacterized LOC4324904 
 zma-u.5   100382925   uncharacterized LOC100382925 
 vvi-u.5   100244217   uncharacterized LOC100244217 
 ppo-u.5   7491965   uncharacterized LOC7491965 
 mtr-u.5   25501703   signal recognition particle subunit SRP72 

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Top 50 coexpressed genes to CHLRE_03g182500v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_03g182500v5 (cre-r.1 coexpression data)

CoexMap"5728458"


creCHLRE_03g182500v5 | Entrez gene ID : 5728458      
Species cre ath gma sly osa zma vvi ppo mtr sbi nta bra hvu cit bdi sot tae bna ghi
Paralog 1 2 2 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG cre03060 [list] [network] Protein export (34 genes)
GO BP
GO:0006614 [list] [network] SRP-dependent cotranslational protein targeting to membrane  (13 genes)  IEA  
GO CC
GO:0005786 [list] [network] signal recognition particle, endoplasmic reticulum targeting  (6 genes)  IEA  
GO MF
GO:0008312 [list] [network] 7S RNA binding  (7 genes)  IEA  
GO:0043022 [list] [network] ribosome binding  (39 genes)  IEA  
GO:0005515 [list] [network] protein binding  (1927 genes)  IEA  
Protein XP_001702951.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 7,  nucl 1,  chlo 1,  plas 1,  cysk_nucl 1  (predict for XP_001702951.1)
Subcellular
localization
TargetP
other 7  (predict for XP_001702951.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_03g182500v5

.
ath-u.5
for
AT1G67650

.
ath-u.5
for
AT1G67680

.
gma-u.5
for
100810125

.
gma-u.5
for
100791472

.
sly-u.5
for
101255954

.
osa-u.5
for
4324904

.
zma-u.5
for
100382925

.
vvi-u.5
for
100244217

.
ppo-u.5
for
7491965

.
mtr-u.5
for
25501703

.


Ortholog ID: 8296
Species ath ath gma gma sly osa zma bra vvi ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot sot cit bdi nta nta
Symbol AT1G67650 AT1G67680 LOC100810125 LOC100791472 LOC101255954 LOC4324904 LOC100382925 LOC103831189 LOC100244217 LOC7491965 LOC25501703 LOC123071773 LOC123062907 LOC123445093 LOC107903902 LOC107893969 LOC106454283 LOC106405983 CHLRE_03g182500v5 LOC8062455 LOC102594818 LOC102594494 LOC102613098 LOC100832940 LOC107793921 LOC107818904
Function* SRP72 RNA-binding domain-containing protein SRP72 RNA-binding domain-containing protein signal recognition particle subunit SRP72 signal recognition particle subunit SRP72 uncharacterized LOC101255954 uncharacterized LOC4324904 uncharacterized LOC100382925 signal recognition particle subunit SRP72 uncharacterized LOC100244217 uncharacterized LOC7491965 signal recognition particle subunit SRP72 signal recognition particle subunit SRP72 signal recognition particle subunit SRP72 signal recognition particle subunit SRP72-like signal recognition particle subunit SRP72 signal recognition particle subunit SRP72 signal recognition particle subunit SRP72-like signal recognition particle subunit SRP72 uncharacterized protein signal recognition particle subunit SRP72 signal recognition particle subunit SRP72-like uncharacterized LOC102594494 uncharacterized LOC102613098 signal recognition particle subunit SRP72 uncharacterized LOC107793921 uncharacterized LOC107818904
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03030 DNA replication 3
ath03040 Spliceosome 2
ath04120 Ubiquitin mediated proteolysis 2
ath03010 Ribosome 2
ath03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04141 Protein processing in endoplasmic reticulum 7
ath00510 N-Glycan biosynthesis 4
ath00513 Various types of N-glycan biosynthesis 4
ath03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04141 Protein processing in endoplasmic reticulum 8
gma03060 Protein export 5
gma04145 Phagosome 3
gma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00970 Aminoacyl-tRNA biosynthesis 6
gma01230 Biosynthesis of amino acids 3
gma00860 Porphyrin metabolism 2
gma01240 Biosynthesis of cofactors 2
gma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00510 N-Glycan biosynthesis 2
sly04141 Protein processing in endoplasmic reticulum 2
sly04144 Endocytosis 2
sly05100 Bacterial invasion of epithelial cells 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03050 Proteasome 2
osa03060 Protein export 2
osa03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04144 Endocytosis 3
zma03060 Protein export 2
zma04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 3
vvi03040 Spliceosome 3
vvi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00190 Oxidative phosphorylation 2
ppo00710 Carbon fixation by Calvin cycle 2
ppo01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04141 Protein processing in endoplasmic reticulum 6
mtr00510 N-Glycan biosynthesis 3
mtr00513 Various types of N-glycan biosynthesis 3
mtr00020 Citrate cycle (TCA cycle) 2
mtr01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04141 Protein processing in endoplasmic reticulum 9
tae04145 Phagosome 7
tae03060 Protein export 7
tae03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03060 Protein export 6
tae03013 Nucleocytoplasmic transport 5
tae04141 Protein processing in endoplasmic reticulum 3
tae04145 Phagosome 3
tae03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04141 Protein processing in endoplasmic reticulum 4
hvu03050 Proteasome 2
hvu04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 10
ghi04120 Ubiquitin mediated proteolysis 4
ghi03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 10
ghi04120 Ubiquitin mediated proteolysis 4
ghi03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03050 Proteasome 10
bna03060 Protein export 2
bna03022 Basal transcription factors 2
bna03420 Nucleotide excision repair 2
bna03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03050 Proteasome 10
bna03060 Protein export 2
bna03022 Basal transcription factors 2
bna03420 Nucleotide excision repair 2
bna03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00970 Aminoacyl-tRNA biosynthesis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03018 RNA degradation 2
sbi03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03013 Nucleocytoplasmic transport 6
sot03040 Spliceosome 5
sot03015 mRNA surveillance pathway 4
sot03060 Protein export 3
sot04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03013 Nucleocytoplasmic transport 4
sot03060 Protein export 3
sot03015 mRNA surveillance pathway 3
sot03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04141 Protein processing in endoplasmic reticulum 5
bdi04145 Phagosome 3
bdi03060 Protein export 3
bdi04142 Lysosome 2
bdi00510 N-Glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04144 Endocytosis 4
nta04142 Lysosome 2
nta05100 Bacterial invasion of epithelial cells 2
nta03060 Protein export 2
nta03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04144 Endocytosis 4
nta03040 Spliceosome 3
nta03060 Protein export 2
nta04142 Lysosome 2
nta05100 Bacterial invasion of epithelial cells 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 843090 843093 100810125 100791472 101255954 4324904 100382925 103831189 100244217 7491965 25501703 123071773 123062907 123445093 107903902 107893969 106454283 106405983 5728458 8062455 102594818 102594494 102613098 100832940 107793921 107818904
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