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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_03g182800v5   uncharacterized protein 
 ath-u.5   AGT3   alanine:glyoxylate aminotransferase 3 
 ath-u.5   PYD4   PYRIMIDINE 4 
 ath-u.5   AGT2   alanine:glyoxylate aminotransferase 2 
 gma-u.5   100170738   alanine--glyoxylate aminotransferase 2 homolog 3, mitochondrial 
 gma-u.5   100820451   alanine--glyoxylate aminotransferase 2 homolog 2, mitochondrial 
 gma-u.5   100804017   alanine--glyoxylate aminotransferase 2 homolog 1, mitochondrial 
 sly-u.5   101247011   alanine-glyoxylate transaminase 
 sly-u.5   101268729   alanine--glyoxylate aminotransferase 2 homolog 2, mitochondrial 
 osa-u.5   4339095   alanine--glyoxylate aminotransferase 2 homolog 2, mitochondrial 
 osa-u.5   4332775   alanine--glyoxylate aminotransferase 2 homolog 3, mitochondrial 
 osa-u.5   4331779   alanine--glyoxylate aminotransferase 2 homolog 1, mitochondrial 
 zma-u.5   103631778   alanine--glyoxylate aminotransferase 2 homolog 1, mitochondrial 
 zma-u.5   100384690   uncharacterized LOC100384690 
 zma-u.5   100279249   uncharacterized LOC100279249 
 vvi-u.5   100258727   alanine--glyoxylate aminotransferase 2 homolog 3, mitochondrial 
 vvi-u.5   100251671   alanine--glyoxylate aminotransferase 2 homolog 2, mitochondrial 
 vvi-u.5   100243935   alanine--glyoxylate aminotransferase 2 homolog 1, mitochondrial 
 ppo-u.5   7468078   alanine--glyoxylate aminotransferase 2 homolog 2, mitochondrial 
 ppo-u.5   7460426   alanine--glyoxylate aminotransferase 2 homolog 2, mitochondrial 
 mtr-u.5   11442560   alanine--glyoxylate aminotransferase 2 homolog 1, mitochondrial 
 mtr-u.5   11433125   alanine--glyoxylate aminotransferase 2 homolog 3, mitochondrial 
 mtr-u.5   25490994   alanine--glyoxylate aminotransferase 2 homolog 2, mitochondrial 

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Top 50 coexpressed genes to CHLRE_03g182800v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_03g182800v5 (cre-r.1 coexpression data)

CoexMap"5728461"


creCHLRE_03g182800v5 | Entrez gene ID : 5728461      
Species cre ath gma sly osa zma vvi ppo mtr sbi nta bra hvu cit bdi sot tae bna ghi
Paralog 1 3 3 2 3 3 3 2 3 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG cre00250 [list] [network] Alanine, aspartate and glutamate metabolism (28 genes)
cre00260 [list] [network] Glycine, serine and threonine metabolism (35 genes)
cre00270 [list] [network] Cysteine and methionine metabolism (53 genes)
cre00280 [list] [network] Valine, leucine and isoleucine degradation (17 genes)
cre00630 [list] [network] Glyoxylate and dicarboxylate metabolism (43 genes)
cre01200 [list] [network] Carbon metabolism (143 genes)
cre01210 [list] [network] 2-Oxocarboxylic acid metabolism (46 genes)
GO BP
GO:0009436 [list] [network] glyoxylate catabolic process  (1 genes)  IEA  
GO:0019481 [list] [network] L-alanine catabolic process, by transamination  (1 genes)  IEA  
GO CC
GO:0005739 [list] [network] mitochondrion  (441 genes)  IEA  
GO MF
GO:0008453 [list] [network] alanine-glyoxylate transaminase activity  (4 genes)  IEA  
GO:0030170 [list] [network] pyridoxal phosphate binding  (46 genes)  IEA  
Protein XP_001702954.2 [sequence] [blastp]
Subcellular
localization
wolf
pero 4,  cyto 3,  chlo 2  (predict for XP_001702954.2)
Subcellular
localization
TargetP
other 8  (predict for XP_001702954.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_03g182800v5

.
ath-u.5
for
AGT3

.
ath-u.5
for
PYD4

.
ath-u.5
for
AGT2

.
gma-u.5
for
100170738

.
gma-u.5
for
100820451

.
gma-u.5
for
100804017

.
sly-u.5
for
101247011

.
sly-u.5
for
101268729

.
osa-u.5
for
4339095

.
osa-u.5
for
4332775

.
osa-u.5
for
4331779

.
zma-u.5
for
103631778

.
zma-u.5
for
100384690

.
zma-u.5
for
100279249

.
vvi-u.5
for
100258727

.
vvi-u.5
for
100251671

.
vvi-u.5
for
100243935

.
ppo-u.5
for
7468078

.
ppo-u.5
for
7460426

.
mtr-u.5
for
11442560

.
mtr-u.5
for
11433125

.
mtr-u.5
for
25490994

.


Ortholog ID: 1459
Species ath ath gma gma sly sly osa osa zma zma bra bra vvi vvi ppo ppo mtr mtr tae tae hvu hvu ghi ghi bna bna cre sbi sbi sot sot cit cit bdi bdi nta nta
Symbol PYD4 AGT2 LOC100797583 LOC100804017 LOC101247011 LOC101268729 LOC4331779 LOC4339095 LOC100274974 LOC103631778 LOC103865668 LOC103857781 LOC100251671 LOC100258727 LOC7468078 LOC7460426 LOC25490994 LOC11442560 LOC123099923 LOC123182362 LOC123444782 LOC123449571 LOC121206319 LOC107903538 LOC106438152 LOC106439231 CHLRE_03g182800v5 LOC8064129 LOC8082323 LOC102589300 LOC102582419 LOC102618447 LOC102615236 LOC100846647 LOC100824380 LOC107827733 LOC107825954
Function* PYRIMIDINE 4 alanine:glyoxylate aminotransferase 2 alanine--glyoxylate aminotransferase 2 homolog 3, mitochondrial alanine--glyoxylate aminotransferase 2 homolog 1, mitochondrial alanine-glyoxylate transaminase alanine--glyoxylate aminotransferase 2 homolog 2, mitochondrial alanine--glyoxylate aminotransferase 2 homolog 1, mitochondrial alanine--glyoxylate aminotransferase 2 homolog 2, mitochondrial uncharacterized LOC100274974 alanine--glyoxylate aminotransferase 2 homolog 1, mitochondrial alanine--glyoxylate aminotransferase 2 homolog 2, mitochondrial alanine--glyoxylate aminotransferase 2 homolog 2, mitochondrial alanine--glyoxylate aminotransferase 2 homolog 2, mitochondrial alanine--glyoxylate aminotransferase 2 homolog 3, mitochondrial alanine--glyoxylate aminotransferase 2 homolog 2, mitochondrial alanine--glyoxylate aminotransferase 2 homolog 2, mitochondrial alanine--glyoxylate aminotransferase 2 homolog 2, mitochondrial alanine--glyoxylate aminotransferase 2 homolog 1, mitochondrial alanine--glyoxylate aminotransferase 2 homolog 3, mitochondrial alanine--glyoxylate aminotransferase 2 homolog 3, mitochondrial alanine--glyoxylate aminotransferase 2 homolog 3, mitochondrial-like alanine--glyoxylate aminotransferase 2 homolog 1, mitochondrial alanine--glyoxylate aminotransferase 2 homolog 3, mitochondrial alanine--glyoxylate aminotransferase 2 homolog 3, mitochondrial alanine--glyoxylate aminotransferase 2 homolog 2, mitochondrial alanine--glyoxylate aminotransferase 2 homolog 3, mitochondrial uncharacterized protein alanine--glyoxylate aminotransferase 2 homolog 3, mitochondrial alanine--glyoxylate aminotransferase 2 homolog 3, mitochondrial alanine--glyoxylate aminotransferase 2 homolog 2, mitochondrial alanine--glyoxylate aminotransferase 2 homolog 1, mitochondrial alanine--glyoxylate aminotransferase 2 homolog 1, mitochondrial alanine--glyoxylate aminotransferase 2 homolog 3, mitochondrial alanine--glyoxylate aminotransferase 2 homolog 1, mitochondrial alanine--glyoxylate aminotransferase 2 homolog 3, mitochondrial alanine--glyoxylate aminotransferase 2 homolog 1, mitochondrial alanine--glyoxylate aminotransferase 2 homolog 3, mitochondrial
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01200 Carbon metabolism 3
ath00270 Cysteine and methionine metabolism 2
ath01230 Biosynthesis of amino acids 2
ath00260 Glycine, serine and threonine metabolism 2
ath00630 Glyoxylate and dicarboxylate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00280 Valine, leucine and isoleucine degradation 7
ath00640 Propanoate metabolism 4
ath01210 2-Oxocarboxylic acid metabolism 4
ath00260 Glycine, serine and threonine metabolism 3
ath00785 Lipoic acid metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00260 Glycine, serine and threonine metabolism 2
gma00630 Glyoxylate and dicarboxylate metabolism 2
gma01200 Carbon metabolism 2
gma00920 Sulfur metabolism 2
gma01320 Sulfur cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00280 Valine, leucine and isoleucine degradation 10
gma01210 2-Oxocarboxylic acid metabolism 3
gma00071 Fatty acid degradation 2
gma00592 alpha-Linolenic acid metabolism 2
gma01040 Biosynthesis of unsaturated fatty acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00280 Valine, leucine and isoleucine degradation 5
sly00260 Glycine, serine and threonine metabolism 4
sly01200 Carbon metabolism 4
sly00071 Fatty acid degradation 4
sly00310 Lysine degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00280 Valine, leucine and isoleucine degradation 4
sly00240 Pyrimidine metabolism 2
sly00270 Cysteine and methionine metabolism 2
sly00410 beta-Alanine metabolism 2
sly00260 Glycine, serine and threonine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00280 Valine, leucine and isoleucine degradation 6
osa01210 2-Oxocarboxylic acid metabolism 5
osa00250 Alanine, aspartate and glutamate metabolism 3
osa01230 Biosynthesis of amino acids 3
osa00640 Propanoate metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa01200 Carbon metabolism 4
osa00630 Glyoxylate and dicarboxylate metabolism 3
osa00920 Sulfur metabolism 2
osa00280 Valine, leucine and isoleucine degradation 2
osa04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04626 Plant-pathogen interaction 2
zma00250 Alanine, aspartate and glutamate metabolism 2
zma00260 Glycine, serine and threonine metabolism 2
zma00270 Cysteine and methionine metabolism 2
zma00280 Valine, leucine and isoleucine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00280 Valine, leucine and isoleucine degradation 10
zma01210 2-Oxocarboxylic acid metabolism 5
zma00640 Propanoate metabolism 4
zma01200 Carbon metabolism 4
zma00071 Fatty acid degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00330 Arginine and proline metabolism 3
bra00260 Glycine, serine and threonine metabolism 3
bra04146 Peroxisome 2
bra00250 Alanine, aspartate and glutamate metabolism 2
bra00071 Fatty acid degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00270 Cysteine and methionine metabolism 2
vvi00280 Valine, leucine and isoleucine degradation 2
vvi01210 2-Oxocarboxylic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00270 Cysteine and methionine metabolism 2
vvi00600 Sphingolipid metabolism 2
vvi04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00250 Alanine, aspartate and glutamate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00280 Valine, leucine and isoleucine degradation 6
mtr01210 2-Oxocarboxylic acid metabolism 3
mtr00260 Glycine, serine and threonine metabolism 2
mtr00640 Propanoate metabolism 2
mtr00785 Lipoic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00250 Alanine, aspartate and glutamate metabolism 3
tae00260 Glycine, serine and threonine metabolism 3
tae00270 Cysteine and methionine metabolism 3
tae00280 Valine, leucine and isoleucine degradation 3
tae00630 Glyoxylate and dicarboxylate metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00260 Glycine, serine and threonine metabolism 6
tae00280 Valine, leucine and isoleucine degradation 6
tae00310 Lysine degradation 6
tae00330 Arginine and proline metabolism 5
tae00250 Alanine, aspartate and glutamate metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00310 Lysine degradation 3
hvu00630 Glyoxylate and dicarboxylate metabolism 3
hvu01200 Carbon metabolism 3
hvu00260 Glycine, serine and threonine metabolism 2
hvu00280 Valine, leucine and isoleucine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00280 Valine, leucine and isoleucine degradation 9
hvu00640 Propanoate metabolism 3
hvu01210 2-Oxocarboxylic acid metabolism 3
hvu00785 Lipoic acid metabolism 2
hvu01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00250 Alanine, aspartate and glutamate metabolism 6
ghi00260 Glycine, serine and threonine metabolism 6
ghi00270 Cysteine and methionine metabolism 6
ghi00280 Valine, leucine and isoleucine degradation 6
ghi00630 Glyoxylate and dicarboxylate metabolism 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00250 Alanine, aspartate and glutamate metabolism 6
ghi00260 Glycine, serine and threonine metabolism 6
ghi00270 Cysteine and methionine metabolism 6
ghi00280 Valine, leucine and isoleucine degradation 6
ghi00630 Glyoxylate and dicarboxylate metabolism 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00250 Alanine, aspartate and glutamate metabolism 4
bna00260 Glycine, serine and threonine metabolism 4
bna00270 Cysteine and methionine metabolism 4
bna00280 Valine, leucine and isoleucine degradation 4
bna00630 Glyoxylate and dicarboxylate metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00250 Alanine, aspartate and glutamate metabolism 2
bna00260 Glycine, serine and threonine metabolism 2
bna00270 Cysteine and methionine metabolism 2
bna00280 Valine, leucine and isoleucine degradation 2
bna00630 Glyoxylate and dicarboxylate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00240 Pyrimidine metabolism 2
cre00410 beta-Alanine metabolism 2
cre00770 Pantothenate and CoA biosynthesis 2
cre04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 7
sbi01230 Biosynthesis of amino acids 7
sbi00940 Phenylpropanoid biosynthesis 3
sbi01200 Carbon metabolism 2
sbi00360 Phenylalanine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00999 Biosynthesis of various plant secondary metabolites 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00280 Valine, leucine and isoleucine degradation 6
sot01210 2-Oxocarboxylic acid metabolism 3
sot00310 Lysine degradation 2
sot00640 Propanoate metabolism 2
sot00785 Lipoic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00280 Valine, leucine and isoleucine degradation 4
sot01200 Carbon metabolism 3
sot00250 Alanine, aspartate and glutamate metabolism 2
sot00260 Glycine, serine and threonine metabolism 2
sot00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit01200 Carbon metabolism 3
cit00260 Glycine, serine and threonine metabolism 2
cit00630 Glyoxylate and dicarboxylate metabolism 2
cit01230 Biosynthesis of amino acids 2
cit00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit01200 Carbon metabolism 2
cit00280 Valine, leucine and isoleucine degradation 2
cit00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi01200 Carbon metabolism 5
bdi00280 Valine, leucine and isoleucine degradation 4
bdi00330 Arginine and proline metabolism 3
bdi04146 Peroxisome 3
bdi00071 Fatty acid degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00280 Valine, leucine and isoleucine degradation 5
bdi00330 Arginine and proline metabolism 3
bdi00561 Glycerolipid metabolism 3
bdi01210 2-Oxocarboxylic acid metabolism 2
bdi00010 Glycolysis / Gluconeogenesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00280 Valine, leucine and isoleucine degradation 8
nta00270 Cysteine and methionine metabolism 6
nta01210 2-Oxocarboxylic acid metabolism 6
nta00250 Alanine, aspartate and glutamate metabolism 5
nta01200 Carbon metabolism 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00280 Valine, leucine and isoleucine degradation 9
nta00260 Glycine, serine and threonine metabolism 4
nta00310 Lysine degradation 4
nta00052 Galactose metabolism 2
nta00520 Amino sugar and nucleotide sugar metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 820034 830120 100797583 100804017 101247011 101268729 4331779 4339095 100274974 103631778 103865668 103857781 100251671 100258727 7468078 7460426 25490994 11442560 123099923 123182362 123444782 123449571 121206319 107903538 106438152 106439231 5728461 8064129 8082323 102589300 102582419 102618447 102615236 100846647 100824380 107827733 107825954
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