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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_17g744147v5   uncharacterized protein 
 ath-u.5   AT2G42270   U5 small nuclear ribonucleoprotein helicase 
 ath-u.5   AT5G61140   U5 small nuclear ribonucleoprotein helicase 
 ath-u.5   emb1507   U5 small nuclear ribonucleoprotein helicase 
 gma-u.5   100816176   DExH-box ATP-dependent RNA helicase DExH12 
 gma-u.5   100811503   DExH-box ATP-dependent RNA helicase DExH14 
 gma-u.5   100780515   DExH-box ATP-dependent RNA helicase DExH12 
 sly-u.5   101254105   DExH-box ATP-dependent RNA helicase DExH12-like 
 sly-u.5   101255504   DExH-box ATP-dependent RNA helicase DExH12 
 sly-u.5   101260947   DExH-box ATP-dependent RNA helicase DExH14 
 osa-u.5   4328024   DExH-box ATP-dependent RNA helicase DExH12 
 osa-u.5   4332045   DExH-box ATP-dependent RNA helicase DExH14 
 zma-u.5   103633484   DExH-box ATP-dependent RNA helicase DExH12 
 zma-u.5   103639442   DExH-box ATP-dependent RNA helicase DExH14 
 vvi-u.5   100244096   DExH-box ATP-dependent RNA helicase DExH12 
 vvi-u.5   100251846   DExH-box ATP-dependent RNA helicase DExH14 
 ppo-u.5   7463125   DExH-box ATP-dependent RNA helicase DExH12 
 ppo-u.5   18105734   DExH-box ATP-dependent RNA helicase DExH14 
 ppo-u.5   7454552   DExH-box ATP-dependent RNA helicase DExH12 
 mtr-u.5   11423909   DExH-box ATP-dependent RNA helicase DExH12 
 mtr-u.5   11425401   DExH-box ATP-dependent RNA helicase DExH14 
 mtr-u.5   25491349   DExH-box ATP-dependent RNA helicase DExH12 

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Top 50 coexpressed genes to CHLRE_17g744147v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_17g744147v5 (cre-r.1 coexpression data)

CoexMap"5729136"


creCHLRE_17g744147v5 | Entrez gene ID : 5729136      
Species cre ath gma sly osa zma vvi ppo mtr sbi nta bra hvu cit bdi sot tae bna ghi
Paralog 1 3 3 3 2 2 2 3 3 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG cre03040 [list] [network] Spliceosome (105 genes)
GO BP
GO CC
GO:0005634 [list] [network] nucleus  (1576 genes)  IEA  
GO MF
GO:0016887 [list] [network] ATP hydrolysis activity  (290 genes)  IEA  
GO:0005524 [list] [network] ATP binding  (1223 genes)  IEA  
GO:0003676 [list] [network] nucleic acid binding  (1484 genes)  IEA  
Protein XP_042915168.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 3,  nucl 2,  cyto_pero 2,  cyto_plas 2  (predict for XP_042915168.1)
Subcellular
localization
TargetP
other 7  (predict for XP_042915168.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_17g744147v5

.
ath-u.5
for
AT2G42270

.
ath-u.5
for
AT5G61140

.
ath-u.5
for
emb1507

.
gma-u.5
for
100816176

.
gma-u.5
for
100811503

.
gma-u.5
for
100780515

.
sly-u.5
for
101254105

.
sly-u.5
for
101255504

.
sly-u.5
for
101260947

.
osa-u.5
for
4328024

.
osa-u.5
for
4332045

.
zma-u.5
for
103633484

.
zma-u.5
for
103639442

.
vvi-u.5
for
100244096

.
vvi-u.5
for
100251846

.
ppo-u.5
for
7463125

.
ppo-u.5
for
18105734

.
ppo-u.5
for
7454552

.
mtr-u.5
for
11423909

.
mtr-u.5
for
11425401

.
mtr-u.5
for
25491349

.


Ortholog ID: 1918
Species ath ath gma gma sly sly osa osa zma zma bra bra vvi vvi ppo ppo mtr mtr tae tae hvu hvu ghi ghi bna bna cre sbi sbi sot sot cit cit bdi bdi nta nta
Symbol emb1507 AT5G61140 LOC100816176 LOC100780515 LOC101255504 LOC101260947 LOC4332045 LOC4328024 LOC103633484 LOC103639442 LOC103854936 LOC103853191 LOC100244096 LOC100251846 LOC7454552 LOC18105734 LOC11425401 LOC25491349 LOC123085072 LOC123131673 LOC123401531 LOC123410607 LOC107915277 LOC107896364 LOC106387226 LOC106399072 CHLRE_17g744147v5 LOC8063540 LOC8056894 LOC102592348 LOC102605438 LOC102617292 LOC102616786 LOC100821076 LOC100827281 LOC107829279 LOC107771980
Function* U5 small nuclear ribonucleoprotein helicase U5 small nuclear ribonucleoprotein helicase DExH-box ATP-dependent RNA helicase DExH12 DExH-box ATP-dependent RNA helicase DExH12 DExH-box ATP-dependent RNA helicase DExH12 DExH-box ATP-dependent RNA helicase DExH14 DExH-box ATP-dependent RNA helicase DExH14 DExH-box ATP-dependent RNA helicase DExH12 DExH-box ATP-dependent RNA helicase DExH12 DExH-box ATP-dependent RNA helicase DExH14 DExH-box ATP-dependent RNA helicase DExH14 DExH-box ATP-dependent RNA helicase DExH12 DExH-box ATP-dependent RNA helicase DExH12 DExH-box ATP-dependent RNA helicase DExH14 DExH-box ATP-dependent RNA helicase DExH12 DExH-box ATP-dependent RNA helicase DExH14 DExH-box ATP-dependent RNA helicase DExH14 DExH-box ATP-dependent RNA helicase DExH12 DExH-box ATP-dependent RNA helicase DExH14 DExH-box ATP-dependent RNA helicase DExH12 DExH-box ATP-dependent RNA helicase DExH12 DExH-box ATP-dependent RNA helicase DExH12-like DExH-box ATP-dependent RNA helicase DExH12 DExH-box ATP-dependent RNA helicase DExH12 DExH-box ATP-dependent RNA helicase DExH13 DExH-box ATP-dependent RNA helicase DExH12-like uncharacterized protein DExH-box ATP-dependent RNA helicase DExH12 DExH-box ATP-dependent RNA helicase DExH14 U5 small nuclear ribonucleoprotein 200 kDa helicase-like activating signal cointegrator 1 complex subunit 3 DExH-box ATP-dependent RNA helicase DExH12-like DExH-box ATP-dependent RNA helicase DExH14 DExH-box ATP-dependent RNA helicase DExH14 DExH-box ATP-dependent RNA helicase DExH12 DExH-box ATP-dependent RNA helicase DExH12-like DExH-box ATP-dependent RNA helicase DExH14
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 5
ath04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03082 ATP-dependent chromatin remodeling 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 4
gma03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 5
sly03013 Nucleocytoplasmic transport 3
sly04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04120 Ubiquitin mediated proteolysis 3
bra00310 Lysine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03082 ATP-dependent chromatin remodeling 2
bra00310 Lysine degradation 2
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 3
mtr04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 6
ghi00230 Purine metabolism 3
ghi03008 Ribosome biogenesis in eukaryotes 2
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 8
ghi00230 Purine metabolism 3
ghi03008 Ribosome biogenesis in eukaryotes 2
ghi03018 RNA degradation 2
ghi00220 Arginine biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 8
sbi03020 RNA polymerase 2
sbi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03018 RNA degradation 2
sbi03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 2
bdi04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 7
bdi03020 RNA polymerase 2
bdi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 9
nta03030 DNA replication 2
nta03420 Nucleotide excision repair 2
nta03430 Mismatch repair 2
nta03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03015 mRNA surveillance pathway 2
nta03082 ATP-dependent chromatin remodeling 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 838690 836235 100816176 100780515 101255504 101260947 4332045 4328024 103633484 103639442 103854936 103853191 100244096 100251846 7454552 18105734 11425401 25491349 123085072 123131673 123401531 123410607 107915277 107896364 106387226 106399072 5729136 8063540 8056894 102592348 102605438 102617292 102616786 100821076 100827281 107829279 107771980
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