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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_03g156150v5   uncharacterized protein 
 ath-u.5   AT5G54910   DEA(D/H)-box RNA helicase family protein 
 gma-u.5   100820055   DEAD-box ATP-dependent RNA helicase 32 
 gma-u.5   100792106   DEAD-box ATP-dependent RNA helicase 32 
 sly-u.5   101249838   DEAD-box ATP-dependent RNA helicase 32 
 osa-u.5   4343385   DEAD-box ATP-dependent RNA helicase 32-like 
 zma-u.5   100501177   uncharacterized LOC100501177 
 vvi-u.5   100246858   DEAD-box ATP-dependent RNA helicase 32 
 ppo-u.5   18095971   DEAD-box ATP-dependent RNA helicase 32 
 mtr-u.5   11425860   DEAD-box ATP-dependent RNA helicase 32 
 mtr-u.5   25492708   DEAD-box ATP-dependent RNA helicase 32 

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Top 50 coexpressed genes to CHLRE_03g156150v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_03g156150v5 (cre-r.1 coexpression data)

CoexMap"66052733"


creCHLRE_03g156150v5 | Entrez gene ID : 66052733    
Species cre ath gma sly osa zma vvi ppo mtr sot hvu tae cit sbi ghi bna nta bdi bra
Paralog 1 1 2 1 1 1 1 1 2 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006364 [list] [network] rRNA processing  (218 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (1576 genes)  IEA  
GO MF
GO:0003724 [list] [network] RNA helicase activity  (44 genes)  IEA  
GO:0005524 [list] [network] ATP binding  (1223 genes)  IEA  
GO:0003676 [list] [network] nucleic acid binding  (1484 genes)  IEA  
Protein XP_042925727.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 8,  cyto 1  (predict for XP_042925727.1)
Subcellular
localization
TargetP
other 8  (predict for XP_042925727.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_03g156150v5

.
ath-u.5
for
AT5G54910

.
gma-u.5
for
100820055

.
gma-u.5
for
100792106

.
sly-u.5
for
101249838

.
osa-u.5
for
4343385

.
zma-u.5
for
100501177

.
vvi-u.5
for
100246858

.
ppo-u.5
for
18095971

.
mtr-u.5
for
11425860

.
mtr-u.5
for
25492708

.


Ortholog ID: 9736
Species ath gma gma sly osa zma bra vvi ppo mtr mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol AT5G54910 LOC100792106 LOC100820055 LOC101249838 LOC4343385 LOC100501177 LOC103844942 LOC100246858 LOC18095971 LOC11425860 LOC25492708 LOC123052546 LOC123044675 LOC123425892 LOC121227856 LOC107903330 LOC125592925 LOC106371232 CHLRE_03g156150v5 LOC8080124 LOC102583283 LOC102617377 LOC100821580 LOC107831076 LOC107788613
Function* DEA(D/H)-box RNA helicase family protein DEAD-box ATP-dependent RNA helicase 32 DEAD-box ATP-dependent RNA helicase 32 DEAD-box ATP-dependent RNA helicase 32 DEAD-box ATP-dependent RNA helicase 32-like uncharacterized LOC100501177 DEAD-box ATP-dependent RNA helicase 32 DEAD-box ATP-dependent RNA helicase 32 DEAD-box ATP-dependent RNA helicase 32 DEAD-box ATP-dependent RNA helicase 32 DEAD-box ATP-dependent RNA helicase 32 DEAD-box ATP-dependent RNA helicase 32 DEAD-box ATP-dependent RNA helicase 32 DEAD-box ATP-dependent RNA helicase 32 DEAD-box ATP-dependent RNA helicase 32 DEAD-box ATP-dependent RNA helicase 32 DEAD-box ATP-dependent RNA helicase 32-like DEAD-box ATP-dependent RNA helicase 32 uncharacterized protein DEAD-box ATP-dependent RNA helicase 32 DEAD-box ATP-dependent RNA helicase 32 DEAD-box ATP-dependent RNA helicase 32 DEAD-box ATP-dependent RNA helicase 32 DEAD-box ATP-dependent RNA helicase 32 DEAD-box ATP-dependent RNA helicase 32-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 4
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 3
mtr03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04141 Protein processing in endoplasmic reticulum 5
hvu03008 Ribosome biogenesis in eukaryotes 4
hvu04626 Plant-pathogen interaction 3
hvu03040 Spliceosome 2
hvu04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 2
bna03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 5
bna03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 4
bdi03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03020 RNA polymerase 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 835582 100792106 100820055 101249838 4343385 100501177 103844942 100246858 18095971 11425860 25492708 123052546 123044675 123425892 121227856 107903330 125592925 106371232 66052733 8080124 102583283 102617377 100821580 107831076 107788613
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