ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
cre-r.1	CHLRE_03g163050v5	uncharacterized protein
cre-r.1	CHLRE_03g163150v5	uncharacterized protein
ath-u.5	AT5G12950	proline-tRNA ligase (DUF1680)
ath-u.5	AT5G12960	proline-tRNA ligase (DUF1680)
gma-u.5	100791803	uncharacterized LOC100791803
gma-u.5	100783150	uncharacterized LOC100783150
gma-u.5	100781521	uncharacterized LOC100781521
sly-u.5	101267484	uncharacterized LOC101267484
sly-u.5	101244563	uncharacterized LOC101244563
osa-u.5	4341521	uncharacterized LOC4341521
osa-u.5	4328608	uncharacterized LOC4328608
zma-u.5	103638805	uncharacterized LOC103638805
zma-u.5	100279496	uncharacterized LOC100279496
bra-r.6	103850835	uncharacterized LOC103850835
bra-r.6	103855987	uncharacterized LOC103855987
vvi-u.5	100250068	uncharacterized LOC100250068
vvi-u.5	100246702	uncharacterized LOC100246702
ppo-u.5	7496037	uncharacterized LOC7496037
ppo-u.5	7493266	uncharacterized LOC7493266
mtr-u.5	11427655	uncharacterized LOC11427655
mtr-u.5	11415960	uncharacterized LOC11415960
mtr-u.5	11412462	uncharacterized LOC11412462
tae-r.2	123158883	uncharacterized LOC123158883
tae-r.2	123148477	uncharacterized LOC123148477
tae-r.2	123144216	uncharacterized LOC123144216
hvu-r.1	123410664	uncharacterized LOC123410664
hvu-r.1	123402899	uncharacterized LOC123402899
ghi-r.1	107954270	uncharacterized LOC107954270
ghi-r.1	107953094	uncharacterized LOC107953094
bna-r.1	106431901	uncharacterized LOC106431901
bna-r.1	106454693	uncharacterized LOC106454693
bna-r.1	BNAC02G04430D	uncharacterized BNAC02G04430D
sbi-r.1	8082442	uncharacterized LOC8082442
sbi-r.1	8082894	uncharacterized LOC8082894
sot-r.1	102603152	uncharacterized LOC102603152
cit-r.1	127900370	uncharacterized LOC127900370
bdi-r.1	100829886	uncharacterized LOC100829886
bdi-r.1	100841742	uncharacterized LOC100841742
nta-r.1	107818673	uncharacterized LOC107818673
nta-r.1	107764936	uncharacterized LOC107764936
nta-r.1	107789151	uncharacterized LOC107789151

Top 50 coexpressed genes to CHLRE_03g163050v5 (cre-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to CHLRE_03g163050v5 (cre-r.1 coexpression data)

CoexMap"66052783"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0046373 [list] [network] L-arabinose metabolic process

(2 genes)

IEA

GO CC

GO MF

GO:0046556 [list] [network] alpha-L-arabinofuranosidase activity

(3 genes)

IEA

Protein

XP_042925865.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 4, cyto 3, chlo 1, plas 1, cyto_E.R. 1

(predict for XP_042925865.1)

Subcellular
localization
TargetP

other 5

(predict for XP_042925865.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	cre-r.1 for CHLRE_03g163050v5	cre-r.1 for CHLRE_03g163150v5	ath-u.5 for AT5G12950	ath-u.5 for AT5G12960	gma-u.5 for 100791803	gma-u.5 for 100783150	gma-u.5 for 100781521	sly-u.5 for 101267484	sly-u.5 for 101244563	osa-u.5 for 4341521	osa-u.5 for 4328608	zma-u.5 for 103638805	zma-u.5 for 100279496	bra-r.6 for 103850835	bra-r.6 for 103855987	vvi-u.5 for 100250068	vvi-u.5 for 100246702	ppo-u.5 for 7496037	ppo-u.5 for 7493266	mtr-u.5 for 11427655	mtr-u.5 for 11415960	mtr-u.5 for 11412462	tae-r.2 for 123158883	tae-r.2 for 123148477	tae-r.2 for 123144216	hvu-r.1 for 123410664	hvu-r.1 for 123402899	ghi-r.1 for 107954270	ghi-r.1 for 107953094	bna-r.1 for 106431901	bna-r.1 for 106454693	bna-r.1 for BNAC02G04430D	sbi-r.1 for 8082442	sbi-r.1 for 8082894	sot-r.1 for 102603152	cit-r.1 for 127900370	bdi-r.1 for 100829886	bdi-r.1 for 100841742	nta-r.1 for 107818673	nta-r.1 for 107764936	nta-r.1 for 107789151

Ortholog

Ortholog ID: 3258

Species

cre

ath

gma

sly

osa

zma

bra

vvi

ppo

mtr

tae

hvu

ghi

bna

sbi

sot

cit

bdi

nta

Symbol

Function^*

uncharacterized protein

proline-tRNA ligase (DUF1680)

uncharacterized LOC100791803

uncharacterized LOC100783150

uncharacterized LOC100781521

uncharacterized LOC101267484

uncharacterized LOC101244563

uncharacterized LOC4341521

uncharacterized LOC4328608

uncharacterized LOC103638805

uncharacterized LOC100279496

uncharacterized LOC103850835

uncharacterized LOC103855987

uncharacterized LOC100250068

uncharacterized LOC100246702

uncharacterized LOC7496037

uncharacterized LOC7493266

uncharacterized LOC11427655

uncharacterized LOC11415960

uncharacterized LOC11412462

uncharacterized LOC123158883

uncharacterized LOC123144216

uncharacterized LOC123164956

uncharacterized LOC123410664

uncharacterized LOC123402899

uncharacterized LOC107954270

uncharacterized LOC107953094

uncharacterized LOC106431901

uncharacterized BNAC02G04430D

uncharacterized LOC106383929

uncharacterized LOC8082442

uncharacterized LOC8082894

uncharacterized LOC102603152

hypothetical protein

uncharacterized LOC102619753

uncharacterized LOC100829886

uncharacterized LOC100841742

uncharacterized LOC107818673

uncharacterized LOC107789151

uncharacterized LOC107780751

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre00500	Starch and sucrose metabolism	2
cre00010	Glycolysis / Gluconeogenesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00500	Starch and sucrose metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00500	Starch and sucrose metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00250	Alanine, aspartate and glutamate metabolism	2
gma00410	beta-Alanine metabolism	2
gma00430	Taurine and hypotaurine metabolism	2
gma00650	Butanoate metabolism	2
gma00230	Purine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00520	Amino sugar and nucleotide sugar metabolism	4
osa00600	Sphingolipid metabolism	2
osa00511	Other glycan degradation	2
osa00040	Pentose and glucuronate interconversions	2
osa00330	Arginine and proline metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00010	Glycolysis / Gluconeogenesis	2
zma01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00520	Amino sugar and nucleotide sugar metabolism	3
zma00511	Other glycan degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00061	Fatty acid biosynthesis	3
bra00620	Pyruvate metabolism	3
bra00640	Propanoate metabolism	3
bra01200	Carbon metabolism	3
bra01212	Fatty acid metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00520	Amino sugar and nucleotide sugar metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00520	Amino sugar and nucleotide sugar metabolism	2
ppo00940	Phenylpropanoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00999	Biosynthesis of various plant secondary metabolites	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00051	Fructose and mannose metabolism	2
mtr00999	Biosynthesis of various plant secondary metabolites	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00051	Fructose and mannose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00510	N-Glycan biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00520	Amino sugar and nucleotide sugar metabolism	3
tae00062	Fatty acid elongation	3
tae01212	Fatty acid metabolism	3
tae04142	Lysosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00500	Starch and sucrose metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04136	Autophagy - other	4
hvu04070	Phosphatidylinositol signaling system	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00592	alpha-Linolenic acid metabolism	2
sbi00350	Tyrosine metabolism	2
sbi00950	Isoquinoline alkaloid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00520	Amino sugar and nucleotide sugar metabolism	6
sbi04142	Lysosome	3
sbi00511	Other glycan degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00940	Phenylpropanoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00520	Amino sugar and nucleotide sugar metabolism	5
bdi00460	Cyanoamino acid metabolism	2
bdi00500	Starch and sucrose metabolism	2
bdi00999	Biosynthesis of various plant secondary metabolites	2
bdi00600	Sphingolipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00073	Cutin, suberine and wax biosynthesis	2
nta00460	Cyanoamino acid metabolism	2
nta00500	Starch and sucrose metabolism	2
nta00999	Biosynthesis of various plant secondary metabolites	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00590	Arachidonic acid metabolism	2
nta00790	Folate biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00590	Arachidonic acid metabolism	2
nta00790	Folate biosynthesis	2

Expression

Expression pattern

Entrez Gene ID^*

66052783

5729074

831135

831136

100791803

100783150

100781521

101267484

101244563

4341521

4328608

103638805

100279496

103850835

103855987

100250068

100246702

7496037

7493266

11427655

11415960

11412462

123158883

123144216

123164956

123410664

123402899

107954270

107953094

106431901

106410101

106383929

8082442

8082894

102603152

102617902

102619753

100829886

100841742

107818673

107789151

107780751

The preparation time of this page was 0.2 [sec].


Species	cre	ath	gma	sly	osa	zma	bra	vvi	ppo	mtr	tae	hvu	ghi	bna	sbi	sot	cit	bdi	nta
Paralog	2	2	3	2	2	2	2	2	2	3	3	2	2	3	2	1	1	2	3

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to CHLRE_03g163050v5 (cre-r.1 coexpression data)

Top 50 enrichment test to CHLRE_03g163050v5 (cre-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**