ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
cre-r.1	CHLRE_06g265200v5	uncharacterized protein
cre-r.1	CHLRE_06g265050v5	uncharacterized protein
cre-r.1	CHLRE_06g264600v5	uncharacterized protein
cre-r.1	CHLRE_16g650250v5	uncharacterized protein
ath-u.5	AT1G07660	Histone superfamily protein
ath-u.5	AT1G07820	Histone superfamily protein
ath-u.5	AT5G59970	Histone superfamily protein
gma-u.5	100804633	histone H4
gma-u.5	100800769	histone H4
gma-u.5	100805597	histone H4
sly-u.5	101264401	histone H4
sly-u.5	101256941	histone H4
osa-u.5	4339029	histone H4
osa-u.5	4347135	histone H4
osa-u.5	4347799	histone H4
zma-u.5	103631010	histone H4
zma-u.5	103633139	histone H4
zma-u.5	103636523	histone H4
bra-r.6	103829765	histone H4
bra-r.6	103865608	histone H4
vvi-u.5	100267358	histone H4
vvi-u.5	100244527	uncharacterized LOC100244527
ppo-u.5	7480176	histone H4
ppo-u.5	18099206	histone H4
ppo-u.5	18099209	histone H4
mtr-u.5	25490772	uncharacterized LOC25490772
mtr-u.5	11445181	histone H4
mtr-u.5	11446478	histone H4
tae-r.2	123091819	histone H4
tae-r.2	123104715	histone H4
tae-r.2	123129385	uncharacterized LOC123129385
hvu-r.1	123400672	uncharacterized LOC123400672
hvu-r.1	123424203	histone H4
hvu-r.1	123397931	histone H4
ghi-r.1	107938428	uncharacterized LOC107938428
ghi-r.1	107885932	histone H4
ghi-r.1	107934611	histone H4
bna-r.1	106346382	histone H4
bna-r.1	106451040	histone H4
bna-r.1	106447366	histone H4
sbi-r.1	8085439	histone H4
sbi-r.1	8074181	histone H4
sbi-r.1	8077977	histone H4
sot-r.1	102604795	histone H4
sot-r.1	102590781	uncharacterized LOC102590781
sot-r.1	102591967	uncharacterized LOC102591967
cit-r.1	102630591	histone H4
cit-r.1	102629767	histone H4
cit-r.1	102614670	histone H4
bdi-r.1	100845838	histone H4
bdi-r.1	100823315	histone H4
bdi-r.1	100824697	histone H4
nta-r.1	107797227	histone H4
nta-r.1	107797021	histone H4
nta-r.1	107783210	histone H4

Top 50 coexpressed genes to CHLRE_06g265200v5 (cre-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to CHLRE_06g265200v5 (cre-r.1 coexpression data)

CoexMap"66053628"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0006334 [list] [network] nucleosome assembly

(73 genes)

IEA

GO CC

GO:0000786 [list] [network] nucleosome

(129 genes)

IEA

GO MF

GO:0030527 [list] [network] structural constituent of chromatin	(130 genes)	IEA
GO:0046982 [list] [network] protein heterodimerization activity	(139 genes)	IEA
GO:0003677 [list] [network] DNA binding	(670 genes)	IEA

Protein

XP_042923555.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 7, cyto 3

(predict for XP_042923555.1)

Subcellular
localization
TargetP

other 4, mito 3

(predict for XP_042923555.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	cre-r.1 for CHLRE_06g265200v5	cre-r.1 for CHLRE_06g265050v5	cre-r.1 for CHLRE_06g264600v5	cre-r.1 for CHLRE_16g650250v5	ath-u.5 for AT1G07660	ath-u.5 for AT1G07820	ath-u.5 for AT5G59970	gma-u.5 for 100804633	gma-u.5 for 100800769	gma-u.5 for 100805597	sly-u.5 for 101264401	sly-u.5 for 101256941	osa-u.5 for 4339029	osa-u.5 for 4347135	osa-u.5 for 4347799	zma-u.5 for 103631010	zma-u.5 for 103633139	zma-u.5 for 103636523	bra-r.6 for 103829765	bra-r.6 for 103865608	vvi-u.5 for 100267358	vvi-u.5 for 100244527	ppo-u.5 for 7480176	ppo-u.5 for 18099206	ppo-u.5 for 18099209	mtr-u.5 for 25490772	mtr-u.5 for 11445181	mtr-u.5 for 11446478	tae-r.2 for 123091819	tae-r.2 for 123104715	tae-r.2 for 123129385	hvu-r.1 for 123400672	hvu-r.1 for 123424203	hvu-r.1 for 123397931	ghi-r.1 for 107938428	ghi-r.1 for 107885932	ghi-r.1 for 107934611	bna-r.1 for 106346382	bna-r.1 for 106451040	bna-r.1 for 106447366	sbi-r.1 for 8085439	sbi-r.1 for 8074181	sbi-r.1 for 8077977	sot-r.1 for 102604795	sot-r.1 for 102590781	sot-r.1 for 102591967	cit-r.1 for 102630591	cit-r.1 for 102629767	cit-r.1 for 102614670	bdi-r.1 for 100845838	bdi-r.1 for 100823315	bdi-r.1 for 100824697	nta-r.1 for 107797227	nta-r.1 for 107797021	nta-r.1 for 107783210

Ortholog

Ortholog ID: 87

Species

cre

ath

gma

sly

osa

zma

bra

vvi

ppo

mtr

tae

hvu

ghi

bna

sbi

sot

cit

bdi

nta

Symbol

HIS4

Function^*

uncharacterized protein

Histone superfamily protein

histone H4

uncharacterized LOC100278340

histone H4

uncharacterized LOC100244527

histone H4

uncharacterized LOC107932445

histone H4

uncharacterized LOC102605056

histone H4

Coexmap

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Coexpression

Please wait a moment.

KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03082	ATP-dependent chromatin remodeling	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03082	ATP-dependent chromatin remodeling	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03082	ATP-dependent chromatin remodeling	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03082	ATP-dependent chromatin remodeling	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03082	ATP-dependent chromatin remodeling	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03082	ATP-dependent chromatin remodeling	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03082	ATP-dependent chromatin remodeling	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03082	ATP-dependent chromatin remodeling	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03082	ATP-dependent chromatin remodeling	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03082	ATP-dependent chromatin remodeling	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03082	ATP-dependent chromatin remodeling	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03082	ATP-dependent chromatin remodeling	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03082	ATP-dependent chromatin remodeling	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03082	ATP-dependent chromatin remodeling	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03082	ATP-dependent chromatin remodeling	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03082	ATP-dependent chromatin remodeling	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03082	ATP-dependent chromatin remodeling	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00240	Pyrimidine metabolism	3
vvi01232	Nucleotide metabolism	3
vvi03030	DNA replication	2
vvi03420	Nucleotide excision repair	2
vvi03430	Mismatch repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03082	ATP-dependent chromatin remodeling	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03082	ATP-dependent chromatin remodeling	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00240	Pyrimidine metabolism	2
ppo01232	Nucleotide metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00240	Pyrimidine metabolism	2
ppo01232	Nucleotide metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03082	ATP-dependent chromatin remodeling	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03082	ATP-dependent chromatin remodeling	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03082	ATP-dependent chromatin remodeling	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03082	ATP-dependent chromatin remodeling	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03082	ATP-dependent chromatin remodeling	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03082	ATP-dependent chromatin remodeling	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03082	ATP-dependent chromatin remodeling	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03082	ATP-dependent chromatin remodeling	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04120	Ubiquitin mediated proteolysis	2
sbi03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03082	ATP-dependent chromatin remodeling	4
sbi04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03082	ATP-dependent chromatin remodeling	5
sot03010	Ribosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03082	ATP-dependent chromatin remodeling	2
sot03440	Homologous recombination	2
sot03460	Fanconi anemia pathway	2
sot03030	DNA replication	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00240	Pyrimidine metabolism	2
sot01232	Nucleotide metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03082	ATP-dependent chromatin remodeling	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03082	ATP-dependent chromatin remodeling	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03082	ATP-dependent chromatin remodeling	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03082	ATP-dependent chromatin remodeling	2
bdi04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03082	ATP-dependent chromatin remodeling	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03082	ATP-dependent chromatin remodeling	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03082	ATP-dependent chromatin remodeling	2

Expression

Expression pattern

Entrez Gene ID^*

66055937

66053633

5716482

837279

836119

817423

100804633

100800769

100793106

101264401

101252889

4339029

9270544

4349248

103636523

103633162

100278340

103829765

103865608

103841295

100267358

100244527

100263191

18099206

18099209

18100499

25497863

11440148

11433555

123041830

123046420

123065861

123445002

123401490

123413523

107932686

107932445

107959073

106447366

106437381

106347525

8077977

8061791

8060296

102597419

102605056

102605372

102630591

102629767

102614670

100845838

100823315

100843591

107777308

107798291

107816714

The preparation time of this page was 0.3 [sec].


Species	cre	ath	gma	sly	osa	zma	bra	vvi	ppo	mtr	tae	hvu	ghi	bna	sbi	sot	cit	bdi	nta
Paralog	4	3	3	2	3	3	2	2	3	3	3	3	3	3	3	3	3	3	3

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to CHLRE_06g265200v5 (cre-r.1 coexpression data)

Top 50 enrichment test to CHLRE_06g265200v5 (cre-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**