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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_12g539750v5   uncharacterized protein 
 ath-u.5   AT4G08310   DNA ligase 
 ath-u.5   AT1G44780   translation initiation factor 
 gma-u.5   100784738   DNA ligase 1 
 gma-u.5   100784437   nucleolin 
 sly-u.5   101246887   suppressor protein SRP40-like 
 osa-u.5   4350684   uncharacterized LOC4350684 
 zma-u.5   100278623   uncharacterized LOC100278623 
 vvi-u.5   100259114   uncharacterized LOC100259114 
 ppo-u.5   7469147   uncharacterized LOC7469147 
 ppo-u.5   7463163   uncharacterized LOC7463163 
 mtr-u.5   11411392   glutamic acid-rich protein 

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Top 50 coexpressed genes to CHLRE_12g539750v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_12g539750v5 (cre-r.1 coexpression data)

CoexMap"66055713"


creCHLRE_12g539750v5 | Entrez gene ID : 66055713    
Species cre ath gma sly osa zma vvi ppo mtr sbi nta bra hvu cit bdi sot tae bna ghi
Paralog 1 2 2 1 1 1 1 2 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0005634 [list] [network] nucleus  (1576 genes)  IEA  
GO MF
Protein XP_042919233.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 10  (predict for XP_042919233.1)
Subcellular
localization
TargetP
other 8  (predict for XP_042919233.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_12g539750v5

.
ath-u.5
for
AT4G08310

.
ath-u.5
for
AT1G44780

.
gma-u.5
for
100784738

.
gma-u.5
for
100784437

.
sly-u.5
for
101246887

.
osa-u.5
for
4350684

.
zma-u.5
for
100278623

.
vvi-u.5
for
100259114

.
ppo-u.5
for
7469147

.
ppo-u.5
for
7463163

.
mtr-u.5
for
11411392

.


Ortholog ID: 8071
Species ath ath gma gma sly osa zma bra vvi ppo ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol AT4G08310 AT1G44780 LOC100784437 LOC100784738 LOC101246887 LOC4350684 LOC100278623 LOC103847732 LOC100259114 LOC7469147 LOC7463163 LOC11411392 LOC123086103 LOC123097405 LOC123448434 LOC107962506 LOC107923933 LOC106397025 LOC106350694 CHLRE_12g539750v5 LOC8066049 LOC102592354 LOC102624672 LOC100823815 LOC107779372 LOC107789159
Function* DNA ligase translation initiation factor nucleolin DNA ligase 1 suppressor protein SRP40-like uncharacterized LOC4350684 uncharacterized LOC100278623 glutamic acid-rich protein uncharacterized LOC100259114 uncharacterized LOC7469147 uncharacterized LOC7463163 glutamic acid-rich protein glutamic acid-rich protein protein IWS1 homolog A triadin-like DNA ligase 1 DNA ligase 1 retrotransposon-like protein 1 topoisomerase 1-associated factor 1 uncharacterized protein DNA ligase 1 glutamic acid-rich protein uncharacterized LOC102624672 HIRA-interacting protein 3 uncharacterized LOC107779372 uncharacterized LOC107789159
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 4
osa03022 Basal transcription factors 2
osa03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 3
mtr03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01240 Biosynthesis of cofactors 3
hvu00780 Biotin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 4
ghi03440 Homologous recombination 2
ghi03450 Non-homologous end-joining 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04517 IgSF CAM signaling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 4
bna04517 IgSF CAM signaling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03013 Nucleocytoplasmic transport 2
bdi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03018 RNA degradation 2
nta03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03030 DNA replication 2
nta03410 Base excision repair 2
nta03420 Nucleotide excision repair 2
nta03430 Mismatch repair 2
nta03018 RNA degradation 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 826385 841042 100784437 100784738 101246887 4350684 100278623 103847732 100259114 7469147 7463163 11411392 123086103 123097405 123448434 107962506 107923933 106397025 106350694 66055713 8066049 102592354 102624672 100823815 107779372 107789159
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