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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-m.4   7454503   WD repeat-containing protein RUP2 
 ppo-u.5   7484386   WD repeat-containing protein RUP2 
 ath-u.5   RUP2   Transducin/WD40 repeat-like superfamily protein 
 ath-u.5   RUP1   Transducin/WD40 repeat-like superfamily protein 
 vvi-u.5   100262691   WD repeat-containing protein RUP2 
 vvi-u.5   100257557   WD repeat-containing protein RUP2 
 sly-u.5   101259391   COP1-like protein 
 osa-u.5   107279948   WD repeat-containing protein RUP2 
 zma-u.5   100216856   F10K1.23 

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Top 50 coexpressed genes to 7454503 (ppo-m.4 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7454503 (ppo-m.4 coexpression data)

CoexMap"7454503"


ppoLOC7454503 | Entrez gene ID : 7454503    
Species ppo ath vvi sly osa zma cre mtr ghi cit hvu bdi sot bra sbi tae nta gma bna
Paralog 2 2 2 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG pop04120 [list] [network] Ubiquitin mediated proteolysis (184 genes)
pop04712 [list] [network] Circadian rhythm - plant (60 genes)
GO BP
GO:0010224 [list] [network] response to UV-B  (7 genes)  IEA  
GO CC
GO MF
GO:0005515 [list] [network] protein binding  (4916 genes)  IEA  
Protein XP_024441716.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  cyto 4,  cyto_nucl 4  (predict for XP_024441716.2)
Subcellular
localization
TargetP
other 5  (predict for XP_024441716.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-m.4
for
7454503

.
ppo-u.5
for
7484386

.
ath-u.5
for
RUP2

.
ath-u.5
for
RUP1

.
vvi-u.5
for
100262691

.
vvi-u.5
for
100257557

.
sly-u.5
for
101259391

.
osa-u.5
for
107279948

.
zma-u.5
for
100216856

.


Ortholog ID: 8162
Species ath ath sly osa zma bra bra vvi vvi ppo hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol RUP2 RUP1 LOC101259391 LOC107279948 LOC100216856 LOC103865631 LOC103857138 LOC100257557 LOC100262691 LOC7484386 LOC123403417 LOC107887192 LOC121214677 LOC106366040 LOC106428408 CHLRE_01g053850v5 LOC8068219 LOC102602733 LOC102607013 LOC100836961 LOC107831140 LOC107778287
Function* Transducin/WD40 repeat-like superfamily protein Transducin/WD40 repeat-like superfamily protein COP1-like protein WD repeat-containing protein RUP2 F10K1.23 WD repeat-containing protein RUP2 WD repeat-containing protein RUP1 WD repeat-containing protein RUP2 WD repeat-containing protein RUP2 WD repeat-containing protein RUP2 WD repeat-containing protein RUP2-like WD repeat-containing protein RUP2 WD repeat-containing protein RUP2 WD repeat-containing protein RUP2 WD repeat-containing protein RUP2-like uncharacterized protein WD repeat-containing protein RUP2 WD repeat-containing protein RUP2-like WD repeat-containing protein RUP2 WD repeat-containing protein RUP2 WD repeat-containing protein RUP2 WD repeat-containing protein RUP2
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04712 Circadian rhythm - plant 4
ath00900 Terpenoid backbone biosynthesis 3
ath03018 RNA degradation 2
ath04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00052 Galactose metabolism 2
ath00500 Starch and sucrose metabolism 2
ath04120 Ubiquitin mediated proteolysis 2
ath04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04712 Circadian rhythm - plant 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04075 Plant hormone signal transduction 3
vvi04120 Ubiquitin mediated proteolysis 2
vvi04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04120 Ubiquitin mediated proteolysis 2
vvi04712 Circadian rhythm - plant 2
vvi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04075 Plant hormone signal transduction 2
hvu00564 Glycerophospholipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
ghi01240 Biosynthesis of cofactors 2
ghi04120 Ubiquitin mediated proteolysis 2
ghi04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
ghi01240 Biosynthesis of cofactors 2
ghi04120 Ubiquitin mediated proteolysis 2
ghi04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04712 Circadian rhythm - plant 7
bna00900 Terpenoid backbone biosynthesis 4
bna04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04712 Circadian rhythm - plant 8
bna00900 Terpenoid backbone biosynthesis 4
bna04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04712 Circadian rhythm - plant 5
sbi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04712 Circadian rhythm - plant 4
sot00940 Phenylpropanoid biosynthesis 2
sot00999 Biosynthesis of various plant secondary metabolites 2
sot04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04120 Ubiquitin mediated proteolysis 2
nta04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04120 Ubiquitin mediated proteolysis 2
nta04712 Circadian rhythm - plant 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 832438 835301 101259391 107279948 100216856 103865631 103857138 100257557 100262691 7484386 123403417 107887192 121214677 106366040 106428408 5715803 8068219 102602733 102607013 100836961 107831140 107778287
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