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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-m.4   7461585   DNA repair protein XRCC3 homolog 
 mtr-u.5   25488274   DNA repair protein XRCC3 homolog 
 osa-u.5   4329686   DNA repair protein XRCC3 homolog 
 zma-u.5   103627300   DNA repair protein XRCC3 homolog 

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Top 50 coexpressed genes to 7461585 (ppo-m.4 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7461585 (ppo-m.4 coexpression data)

CoexMap"7461585"


ppoLOC7461585 | Entrez gene ID : 7461585    
Species ppo mtr osa zma sly sbi nta bra cre vvi cit hvu bdi sot tae ath bna ghi gma
Paralog 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG pop03440 [list] [network] Homologous recombination (53 genes)
GO BP
GO:0071140 [list] [network] resolution of mitotic recombination intermediates  (1 genes)  IEA  
GO:0090656 [list] [network] t-circle formation  (1 genes)  IEA  
GO:0000722 [list] [network] telomere maintenance via recombination  (4 genes)  IEA  
GO:0045003 [list] [network] double-strand break repair via synthesis-dependent strand annealing  (9 genes)  IEA  
GO CC
GO:0033065 [list] [network] Rad51C-XRCC3 complex  (2 genes)  IEA  
GO:0005657 [list] [network] replication fork  (44 genes)  IEA  
GO MF
GO:0000400 [list] [network] four-way junction DNA binding  (5 genes)  IEA  
GO:0140664 [list] [network] ATP-dependent DNA damage sensor activity  (25 genes)  IEA  
GO:0005524 [list] [network] ATP binding  (2559 genes)  IEA  
Protein XP_024445852.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  nucl 1,  cyto 1,  plas 1,  cyto_nucl 1,  nucl_plas 1,  cyto_plas 1  (predict for XP_024445852.1)
Subcellular
localization
TargetP
other 7,  chlo 3  (predict for XP_024445852.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-m.4
for
7461585

.
mtr-u.5
for
25488274

.
osa-u.5
for
4329686

.
zma-u.5
for
103627300

.


Ortholog ID: 11005
Species osa zma mtr tae hvu ghi ghi cre sbi cit bdi nta nta
Symbol LOC4329686 LOC103627300 LOC25488274 LOC123127489 LOC123404013 LOC107942737 LOC107903316 CHLRE_06g278151v5 LOC8068904 LOC102607526 LOC100831144 LOC107819394 LOC107831770
Function* DNA repair protein XRCC3 homolog DNA repair protein XRCC3 homolog DNA repair protein XRCC3 homolog DNA repair protein XRCC3 homolog DNA repair protein XRCC3 homolog DNA repair protein XRCC3 homolog DNA repair protein XRCC3 homolog uncharacterized protein DNA repair protein XRCC3 homolog DNA repair protein XRCC3 homolog DNA repair protein XRCC3 homolog DNA repair protein XRCC3 homolog DNA repair protein XRCC3 homolog
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03410 Base excision repair 2
zma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 16
mtr04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00450 Selenocompound metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04145 Phagosome 4
ghi04517 IgSF CAM signaling 4
ghi04814 Motor proteins 4
ghi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04145 Phagosome 4
ghi04517 IgSF CAM signaling 4
ghi04814 Motor proteins 4
ghi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03020 RNA polymerase 2
sbi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03440 Homologous recombination 2
nta00230 Purine metabolism 2
nta04141 Protein processing in endoplasmic reticulum 2
nta04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03440 Homologous recombination 2
nta00230 Purine metabolism 2
nta04141 Protein processing in endoplasmic reticulum 2
nta04626 Plant-pathogen interaction 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 4329686 103627300 25488274 123127489 123404013 107942737 107903316 66053696 8068904 102607526 100831144 107819394 107831770
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