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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   7461791   serine--tRNA ligase, chloroplastic/mitochondrial 
 ppo-r.4   7461791   serine--tRNA ligase, chloroplastic/mitochondrial 
 ppo-m.4   7461791   serine--tRNA ligase, chloroplastic/mitochondrial 
 gma-u.5   100809150   serine--tRNA ligase, chloroplastic/mitochondrial 
 mtr-u.5   11434218   serine--tRNA ligase, chloroplastic/mitochondrial 
 ath-u.5   SRS   Seryl-tRNA synthetase 
 vvi-u.5   100261676   serine--tRNA ligase, chloroplastic/mitochondrial 
 sly-u.5   101263605   serine--tRNA ligase, chloroplastic/mitochondrial 
 osa-u.5   4350906   serine--tRNA ligase, chloroplastic/mitochondrial 
 zma-u.5   542538   seryl-tRNA synthetase 

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Top 50 coexpressed genes to 7461791 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7461791 (ppo-u.5 coexpression data)

CoexMap"7461791"


ppoLOC7461791 | Entrez gene ID : 7461791    
Species ppo gma mtr ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 3 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG pop00970 [list] [network] Aminoacyl-tRNA biosynthesis (96 genes)
GO BP
GO:0070158 [list] [network] mitochondrial seryl-tRNA aminoacylation  (1 genes)  IEA  
GO CC
GO:0005739 [list] [network] mitochondrion  (675 genes)  IEA  
GO MF
GO:0004828 [list] [network] serine-tRNA ligase activity  (2 genes)  IEA  
GO:0000049 [list] [network] tRNA binding  (34 genes)  IEA  
GO:0005524 [list] [network] ATP binding  (2559 genes)  IEA  
Protein XP_002301073.4 [sequence] [blastp]
XP_052306472.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9  (predict for XP_002301073.4)
cyto 6,  nucl 3,  cyto_pero 3,  cyto_E.R. 3,  cyto_plas 3  (predict for XP_052306472.1)
Subcellular
localization
TargetP
chlo 3  (predict for XP_002301073.4)
other 8  (predict for XP_052306472.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
7461791

.
ppo-r.4
for
7461791

.
ppo-m.4
for
7461791

.
gma-u.5
for
100809150

.
mtr-u.5
for
11434218

.
ath-u.5
for
SRS

.
vvi-u.5
for
100261676

.
sly-u.5
for
101263605

.
osa-u.5
for
4350906

.
zma-u.5
for
542538

.


Ortholog ID: 9209
Species ath gma sly osa zma bra bra vvi ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol SRS LOC100809150 LOC101263605 LOC4350906 LOC542538 LOC103836202 LOC103843218 LOC100261676 LOC7461791 LOC11434218 LOC123120461 LOC123111263 LOC123448544 LOC107957780 LOC107905087 LOC106413865 LOC106362173 CHLRE_02g082877v5 LOC8074400 LOC102585223 LOC102619966 LOC100838732 LOC107821468 LOC107795196
Function* Seryl-tRNA synthetase serine--tRNA ligase, chloroplastic/mitochondrial serine--tRNA ligase, chloroplastic/mitochondrial serine--tRNA ligase, chloroplastic/mitochondrial seryl-tRNA synthetase serine--tRNA ligase, chloroplastic/mitochondrial serine--tRNA ligase, chloroplastic/mitochondrial serine--tRNA ligase, chloroplastic/mitochondrial serine--tRNA ligase, chloroplastic/mitochondrial serine--tRNA ligase, chloroplastic/mitochondrial serine--tRNA ligase, chloroplastic/mitochondrial serine--tRNA ligase, chloroplastic/mitochondrial serine--tRNA ligase, chloroplastic/mitochondrial serine--tRNA ligase, chloroplastic/mitochondrial serine--tRNA ligase, chloroplastic/mitochondrial serine--tRNA ligase, chloroplastic/mitochondrial serine--tRNA ligase, chloroplastic/mitochondrial uncharacterized protein serine--tRNA ligase, chloroplastic/mitochondrial serine--tRNA ligase, chloroplastic/mitochondrial serine--tRNA ligase, chloroplastic/mitochondrial serine--tRNA ligase, chloroplastic/mitochondrial serine--tRNA ligase, chloroplastic/mitochondrial-like serine--tRNA ligase, chloroplastic/mitochondrial
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00970 Aminoacyl-tRNA biosynthesis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00561 Glycerolipid metabolism 2
gma00566 Sulfoquinovose metabolism 2
gma00970 Aminoacyl-tRNA biosynthesis 2
gma00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00970 Aminoacyl-tRNA biosynthesis 3
sly00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00970 Aminoacyl-tRNA biosynthesis 7
osa03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03018 RNA degradation 2
bra00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00970 Aminoacyl-tRNA biosynthesis 6
bra01230 Biosynthesis of amino acids 3
bra00270 Cysteine and methionine metabolism 2
bra00300 Lysine biosynthesis 2
bra03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00030 Pentose phosphate pathway 2
mtr01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00970 Aminoacyl-tRNA biosynthesis 5
tae03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00970 Aminoacyl-tRNA biosynthesis 10
tae00450 Selenocompound metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03060 Protein export 2
hvu03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 4
ghi00970 Aminoacyl-tRNA biosynthesis 2
ghi00750 Vitamin B6 metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 3
ghi00970 Aminoacyl-tRNA biosynthesis 2
ghi00750 Vitamin B6 metabolism 2
ghi02010 ABC transporters 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00970 Aminoacyl-tRNA biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00970 Aminoacyl-tRNA biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00970 Aminoacyl-tRNA biosynthesis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00970 Aminoacyl-tRNA biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 11
cit00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00970 Aminoacyl-tRNA biosynthesis 4
bdi03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 3
nta00230 Purine metabolism 2
nta00240 Pyrimidine metabolism 2
nta01232 Nucleotide metabolism 2
nta00260 Glycine, serine and threonine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 4
nta00230 Purine metabolism 2
nta00240 Pyrimidine metabolism 2
nta01232 Nucleotide metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 837734 100809150 101263605 4350906 542538 103836202 103843218 100261676 7461791 11434218 123120461 123111263 123448544 107957780 107905087 106413865 106362173 5727332 8074400 102585223 102619966 100838732 107821468 107795196
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