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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   7461819   AP-4 complex subunit mu 
 ppo-r.4   7461819   AP-4 complex subunit mu 
 ppo-m.4   7461819   AP-4 complex subunit mu 
 gma-u.5   100811592   AP-4 complex subunit mu-like 
 gma-u.5   100807075   AP-4 complex subunit mu 
 gma-u.5   100800985   AP-4 complex subunit mu 
 mtr-u.5   25490218   AP-4 complex subunit mu 
 mtr-u.5   11437134   AP-4 complex subunit mu 
 ath-u.5   AT4G24550   Clathrin adaptor complexes medium subunit family protein 
 vvi-u.5   100254067   AP-4 complex subunit mu 
 sly-u.5   101252774   AP-4 complex subunit mu 
 osa-u.5   4343931   AP-4 complex subunit mu 
 zma-u.5   100272249   uncharacterized LOC100272249 

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Top 50 coexpressed genes to 7461819 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7461819 (ppo-u.5 coexpression data)

CoexMap"7461819"


ppoLOC7461819 | Entrez gene ID : 7461819    
Species ppo gma mtr ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 3 3 2 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG pop04142 [list] [network] Lysosome (97 genes)
GO BP
GO:0090160 [list] [network] Golgi to lysosome transport  (1 genes)  IEA  
GO:0006605 [list] [network] protein targeting  (126 genes)  IEA  
GO CC
GO:0030131 [list] [network] clathrin adaptor complex  (19 genes)  IEA  
GO:0005802 [list] [network] trans-Golgi network  (131 genes)  IEA  
GO:0031410 [list] [network] cytoplasmic vesicle  (361 genes)  IEA  
GO MF
Protein XP_002302340.2 [sequence] [blastp]
XP_024450052.2 [sequence] [blastp]
XP_052306477.1 [sequence] [blastp]
XP_052306478.1 [sequence] [blastp]
XP_052306479.1 [sequence] [blastp]
XP_052306480.1 [sequence] [blastp]
XP_052306481.1 [sequence] [blastp]
XP_052306482.1 [sequence] [blastp]
XP_052306483.1 [sequence] [blastp]
XP_052306484.1 [sequence] [blastp]
XP_052306485.1 [sequence] [blastp]
XP_052306486.1 [sequence] [blastp]
XP_052306487.1 [sequence] [blastp]
XP_052306488.1 [sequence] [blastp]
XP_052306489.1 [sequence] [blastp]
XP_052306490.1 [sequence] [blastp]
XP_052306491.1 [sequence] [blastp]
XP_052306492.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 5,  chlo 2,  nucl 2  (predict for XP_002302340.2)
cyto 6,  nucl 2,  chlo 1  (predict for XP_024450052.2)
cyto 5,  chlo 2,  nucl 2  (predict for XP_052306477.1)
cyto 5,  chlo 2,  nucl 2  (predict for XP_052306478.1)
cyto 5,  chlo 2,  nucl 2  (predict for XP_052306479.1)
cyto 5,  chlo 2,  nucl 2  (predict for XP_052306480.1)
cyto 5,  chlo 2,  nucl 2  (predict for XP_052306481.1)
cyto 5,  chlo 2,  nucl 2  (predict for XP_052306482.1)
cyto 5,  chlo 2,  nucl 2  (predict for XP_052306483.1)
cyto 5,  chlo 2,  nucl 2  (predict for XP_052306484.1)
cyto 5,  chlo 2,  nucl 2  (predict for XP_052306485.1)
cyto 5,  chlo 2,  nucl 2  (predict for XP_052306486.1)
cyto 5,  chlo 2,  nucl 2  (predict for XP_052306487.1)
cyto 5,  chlo 2,  nucl 2  (predict for XP_052306488.1)
cyto 6,  nucl 2,  chlo 1  (predict for XP_052306489.1)
cyto 6,  nucl 2,  chlo 1  (predict for XP_052306490.1)
cyto 6,  nucl 2,  chlo 1  (predict for XP_052306491.1)
cyto 6,  nucl 2,  chlo 1  (predict for XP_052306492.1)
Subcellular
localization
TargetP
other 8,  mito 3  (predict for XP_002302340.2)
other 8,  mito 3  (predict for XP_024450052.2)
other 8,  mito 3  (predict for XP_052306477.1)
other 8,  mito 3  (predict for XP_052306478.1)
other 8,  mito 3  (predict for XP_052306479.1)
other 8,  mito 3  (predict for XP_052306480.1)
other 8,  mito 3  (predict for XP_052306481.1)
other 8,  mito 3  (predict for XP_052306482.1)
other 8,  mito 3  (predict for XP_052306483.1)
other 8,  mito 3  (predict for XP_052306484.1)
other 8,  mito 3  (predict for XP_052306485.1)
other 8,  mito 3  (predict for XP_052306486.1)
other 8,  mito 3  (predict for XP_052306487.1)
other 8,  mito 3  (predict for XP_052306488.1)
other 8,  mito 3  (predict for XP_052306489.1)
other 8,  mito 3  (predict for XP_052306490.1)
other 8,  mito 3  (predict for XP_052306491.1)
other 8,  mito 3  (predict for XP_052306492.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
7461819

.
ppo-r.4
for
7461819

.
ppo-m.4
for
7461819

.
gma-u.5
for
100811592

.
gma-u.5
for
100807075

.
gma-u.5
for
100800985

.
mtr-u.5
for
25490218

.
mtr-u.5
for
11437134

.
ath-u.5
for
AT4G24550

.
vvi-u.5
for
100254067

.
sly-u.5
for
101252774

.
osa-u.5
for
4343931

.
zma-u.5
for
100272249

.


Ortholog ID: 6622
Species ath gma gma sly osa zma bra bra vvi ppo mtr mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol AT4G24550 LOC100811592 LOC100807075 LOC101252774 LOC4343931 LOC100272249 LOC103834903 LOC103862264 LOC100254067 LOC7461819 LOC25490218 LOC11437134 LOC123052054 LOC123044174 LOC123425265 LOC121217833 LOC107957817 LOC106427420 LOC106396522 CHLRE_02g146600v5 LOC8079208 LOC102581462 LOC102624963 LOC100820878 LOC107774321 LOC107784896
Function* Clathrin adaptor complexes medium subunit family protein AP-4 complex subunit mu-like AP-4 complex subunit mu AP-4 complex subunit mu AP-4 complex subunit mu uncharacterized LOC100272249 AP-4 complex subunit mu AP-4 complex subunit mu AP-4 complex subunit mu AP-4 complex subunit mu AP-4 complex subunit mu AP-4 complex subunit mu AP-4 complex subunit mu AP-4 complex subunit mu AP-4 complex subunit mu AP-4 complex subunit mu AP-4 complex subunit mu AP-4 complex subunit mu AP-4 complex subunit mu-like uncharacterized protein AP-4 complex subunit mu AP-4 complex subunit mu AP-4 complex subunit mu AP-4 complex subunit mu AP-4 complex subunit mu AP-4 complex subunit mu-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04141 Protein processing in endoplasmic reticulum 8
ath00510 N-Glycan biosynthesis 5
ath00513 Various types of N-glycan biosynthesis 5
ath04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04144 Endocytosis 3
gma04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04142 Lysosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03050 Proteasome 6
sly04144 Endocytosis 3
sly04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04145 Phagosome 3
osa04144 Endocytosis 2
osa04142 Lysosome 2
osa04130 SNARE interactions in vesicular transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04142 Lysosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04142 Lysosome 2
bra04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00190 Oxidative phosphorylation 3
bra04142 Lysosome 2
bra01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04144 Endocytosis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00280 Valine, leucine and isoleucine degradation 2
mtr00410 beta-Alanine metabolism 2
mtr00562 Inositol phosphate metabolism 2
mtr00640 Propanoate metabolism 2
mtr01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00190 Oxidative phosphorylation 6
mtr04145 Phagosome 6
mtr04142 Lysosome 4
mtr04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04142 Lysosome 3
tae03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04142 Lysosome 3
tae03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04142 Lysosome 3
hvu04144 Endocytosis 3
hvu04141 Protein processing in endoplasmic reticulum 2
hvu00510 N-Glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04142 Lysosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04142 Lysosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04142 Lysosome 5
bna00190 Oxidative phosphorylation 2
bna04075 Plant hormone signal transduction 2
bna03022 Basal transcription factors 2
bna03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04142 Lysosome 5
bna00190 Oxidative phosphorylation 2
bna04075 Plant hormone signal transduction 2
bna03022 Basal transcription factors 2
bna03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00190 Oxidative phosphorylation 4
cre04145 Phagosome 4
cre04142 Lysosome 3
cre03420 Nucleotide excision repair 2
cre04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03050 Proteasome 4
sbi00190 Oxidative phosphorylation 3
sbi04145 Phagosome 3
sbi04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04141 Protein processing in endoplasmic reticulum 6
sot00190 Oxidative phosphorylation 3
sot04145 Phagosome 3
sot04142 Lysosome 3
sot03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00240 Pyrimidine metabolism 2
bdi01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04142 Lysosome 4
nta00510 N-Glycan biosynthesis 2
nta00513 Various types of N-glycan biosynthesis 2
nta04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04142 Lysosome 2
nta00330 Arginine and proline metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 828557 100811592 100807075 101252774 4343931 100272249 103834903 103862264 100254067 7461819 25490218 11437134 123052054 123044174 123425265 121217833 107957817 106427420 106396522 66052646 8079208 102581462 102624963 100820878 107774321 107784896
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