ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ppo-u.5	7468678	probable CCR4-associated factor 1 homolog 7
ppo-r.4	7468678	probable CCR4-associated factor 1 homolog 7
ppo-m.4	7468678	probable CCR4-associated factor 1 homolog 7
ppo-u.5	7455670	probable CCR4-associated factor 1 homolog 7
ppo-u.5	18094535	probable CCR4-associated factor 1 homolog 6
ppo-u.5	7493220	probable CCR4-associated factor 1 homolog 6
gma-u.5	100798365	probable CCR4-associated factor 1 homolog 7
gma-u.5	100799461	probable CCR4-associated factor 1 homolog 7
gma-u.5	100789409	probable CCR4-associated factor 1 homolog 7
mtr-u.5	112420417	probable CCR4-associated factor 1 homolog 7
mtr-u.5	112421400	probable CCR4-associated factor 1 homolog 7
ath-u.5	AT2G32070	Polynucleotidyl transferase, ribonuclease H-like superfamily protein
ath-u.5	AT5G10960	Polynucleotidyl transferase, ribonuclease H-like superfamily protein
ath-u.5	AT1G80780	Polynucleotidyl transferase, ribonuclease H-like superfamily protein
vvi-u.5	100255985	probable CCR4-associated factor 1 homolog 7
vvi-u.5	100250028	probable CCR4-associated factor 1 homolog 7
vvi-u.5	100248407	probable CCR4-associated factor 1 homolog 7
sly-u.5	101258664	probable CCR4-associated factor 1 homolog 6
sly-u.5	101256741	probable CCR4-associated factor 1 homolog 7
sly-u.5	101244756	probable CCR4-associated factor 1 homolog 7
osa-u.5	4331006	probable CCR4-associated factor 1 homolog 7
osa-u.5	4347066	probable CCR4-associated factor 1 homolog 7
zma-u.5	100282279	CCR4-NOT transcription complex subunit 7
zma-u.5	100216888	uncharacterized LOC100216888
zma-u.5	100193739	CCR4-NOT transcription complex subunit 7

Top 50 coexpressed genes to 7468678 (ppo-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 7468678 (ppo-u.5 coexpression data)

CoexMap"7468678"

[Cytoscape]

Annotation

functional annotation

KEGG

pop03018 [list] [network] RNA degradation (133 genes)

GO BP

GO CC

GO:0030015 [list] [network] CCR4-NOT core complex	(23 genes)	IEA
GO:0030014 [list] [network] CCR4-NOT complex	(34 genes)	IEA
GO:0000932 [list] [network] P-body	(59 genes)	IEA

GO MF

GO:0004535 [list] [network] poly(A)-specific ribonuclease activity	(17 genes)	IEA
GO:0003676 [list] [network] nucleic acid binding	(4002 genes)	IEA

Protein

XP_002309667.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 7, chlo 1, nucl 1, cysk 1, golg 1, cysk_nucl 1

(predict for XP_002309667.1)

Subcellular
localization
TargetP

other 9

(predict for XP_002309667.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ppo-u.5 for 7468678	ppo-r.4 for 7468678	ppo-m.4 for 7468678	ppo-u.5 for 7455670	ppo-u.5 for 18094535	ppo-u.5 for 7493220	gma-u.5 for 100798365	gma-u.5 for 100799461	gma-u.5 for 100789409	mtr-u.5 for 112420417	mtr-u.5 for 112421400	ath-u.5 for AT2G32070	ath-u.5 for AT5G10960	ath-u.5 for AT1G80780	vvi-u.5 for 100255985	vvi-u.5 for 100250028	vvi-u.5 for 100248407	sly-u.5 for 101258664	sly-u.5 for 101256741	sly-u.5 for 101244756	osa-u.5 for 4331006	osa-u.5 for 4347066	zma-u.5 for 100282279	zma-u.5 for 100216888	zma-u.5 for 100193739

Ortholog

Ortholog ID: 1534

Species

ppo

gma

mtr

ath

bra

vvi

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

probable CCR4-associated factor 1 homolog 6