ATTED-II : GeneCoexpression result

Species	Gene	Description
ppo-u.5	7474625	uncharacterized LOC7474625
ppo-r.4	7474625	uncharacterized LOC7474625
ppo-m.4	7474625	uncharacterized LOC7474625
gma-u.5	100807426	protein prenyltransferase alpha subunit repeat-containing protein 1-B
gma-u.5	100797408	protein prenyltransferase alpha subunit repeat-containing protein 1-B
mtr-u.5	25500039	uncharacterized LOC25500039
ath-u.5	AT1G10095	Protein prenylyltransferase superfamily protein
bra-r.6	103839183	protein prenyltransferase alpha subunit repeat-containing protein 1-like
vvi-u.5	100255283	uncharacterized LOC100255283
ghi-r.1	107899174	protein prenyltransferase alpha subunit repeat-containing protein 1-B
ghi-r.1	107895130	protein prenyltransferase alpha subunit repeat-containing protein 1
bna-r.1	BNAC07G17910D	uncharacterized BNAC07G17910D
cit-r.1	102625696	uncharacterized LOC102625696
sly-u.5	101262868	uncharacterized LOC101262868
sot-r.1	102593848	protein prenyltransferase alpha subunit repeat-containing protein 1
nta-r.1	107816425	uncharacterized LOC107816425
nta-r.1	107800740	uncharacterized LOC107800740
osa-u.5	4324143	uncharacterized LOC4324143
zma-u.5	100383224	Protein prenylyltransferase superfamily protein
tae-r.2	123091740	protein prenyltransferase alpha subunit repeat-containing protein 1
tae-r.2	123086304	protein prenyltransferase alpha subunit repeat-containing protein 1
tae-r.2	123096723	protein prenyltransferase alpha subunit repeat-containing protein 1
hvu-r.1	123448227	protein prenyltransferase alpha subunit repeat-containing protein 1
sbi-r.1	8086045	protein prenyltransferase alpha subunit repeat-containing protein 1
sbi-r.1	8085174	protein prenyltransferase alpha subunit repeat-containing protein 1-B
bdi-r.1	100838632	protein prenyltransferase alpha subunit repeat-containing protein 1

Annotation

functional annotation

KEGG

GO BP

GO:0018343 [list] [network] protein farnesylation	(3 genes)	IEA
GO:0018344 [list] [network] protein geranylgeranylation	(8 genes)	IEA

GO CC

GO:0005965 [list] [network] protein farnesyltransferase complex	(3 genes)	IEA
GO:0005953 [list] [network] CAAX-protein geranylgeranyltransferase complex	(4 genes)	IEA
GO:0005737 [list] [network] cytoplasm	(6111 genes)	IEA

GO MF

GO:0004660 [list] [network] protein farnesyltransferase activity	(3 genes)	IEA
GO:0004662 [list] [network] CAAX-protein geranylgeranyltransferase activity	(4 genes)	IEA

Protein

XP_002319657.4 [sequence] [blastp]
XP_024439484.2 [sequence] [blastp]
XP_024439485.2 [sequence] [blastp]
XP_024439486.2 [sequence] [blastp]
XP_052302443.1 [sequence] [blastp]
XP_052302444.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 4, nucl 2, extr 1, cyto_nucl 1	(predict for XP_002319657.4)
chlo 4, nucl 2, extr 1, cyto_nucl 1	(predict for XP_024439484.2)
chlo 4, nucl 2, extr 1, cyto_nucl 1	(predict for XP_024439485.2)
chlo 3, E.R. 2, chlo_mito 2, nucl 1, mito 1, plas 1, nucl_plas 1, E.R._vacu 1, mito_plas 1	(predict for XP_024439486.2)
chlo 4, nucl 2, extr 1, cyto_nucl 1	(predict for XP_052302443.1)
chlo 6, nucl 1, cyto 1, mito 1, extr 1, vacu 1, cyto_nucl 1	(predict for XP_052302444.1)

Subcellular
localization
TargetP

scret 5, other 5	(predict for XP_002319657.4)
scret 5, other 5	(predict for XP_024439484.2)
scret 5, other 5	(predict for XP_024439485.2)
other 8	(predict for XP_024439486.2)
scret 5, other 5	(predict for XP_052302443.1)
scret 5, other 5	(predict for XP_052302444.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ppo-u.5 for 7474625	ppo-r.4 for 7474625	ppo-m.4 for 7474625	gma-u.5 for 100807426	gma-u.5 for 100797408	mtr-u.5 for 25500039	ath-u.5 for AT1G10095	bra-r.6 for 103839183	vvi-u.5 for 100255283	ghi-r.1 for 107899174	ghi-r.1 for 107895130	bna-r.1 for BNAC07G17910D	cit-r.1 for 102625696	sly-u.5 for 101262868	sot-r.1 for 102593848	nta-r.1 for 107816425	nta-r.1 for 107800740	osa-u.5 for 4324143	zma-u.5 for 100383224	tae-r.2 for 123091740	tae-r.2 for 123086304	tae-r.2 for 123096723	hvu-r.1 for 123448227	sbi-r.1 for 8086045	sbi-r.1 for 8085174	bdi-r.1 for 100838632

Ortholog

Ortholog ID: 8687

Species

ppo

gma

mtr

ath

bra

vvi

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

Function^*

uncharacterized LOC7474625

protein prenyltransferase alpha subunit repeat-containing protein 1-B

uncharacterized LOC25500039

Protein prenylyltransferase superfamily protein

protein prenyltransferase alpha subunit repeat-containing protein 1-like

uncharacterized LOC100255283

protein prenyltransferase alpha subunit repeat-containing protein 1-B

protein prenyltransferase alpha subunit repeat-containing protein 1

uncharacterized BNAC07G17910D

uncharacterized LOC102625696

uncharacterized LOC101262868

protein prenyltransferase alpha subunit repeat-containing protein 1

uncharacterized LOC107816425

uncharacterized LOC107800740

uncharacterized LOC4324143

Protein prenylyltransferase superfamily protein

protein prenyltransferase alpha subunit repeat-containing protein 1

protein prenyltransferase alpha subunit repeat-containing protein 1-B

protein prenyltransferase alpha subunit repeat-containing protein 1

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04144	Endocytosis	2
gma00020	Citrate cycle (TCA cycle)	2
gma00480	Glutathione metabolism	2
gma01200	Carbon metabolism	2
gma01210	2-Oxocarboxylic acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00190	Oxidative phosphorylation	3
mtr04145	Phagosome	3
mtr03410	Base excision repair	2
mtr04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03018	RNA degradation	3
vvi03015	mRNA surveillance pathway	2
vvi00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00790	Folate biosynthesis	2
ghi01240	Biosynthesis of cofactors	2
ghi04122	Sulfur relay system	2
ghi00770	Pantothenate and CoA biosynthesis	2
ghi04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00790	Folate biosynthesis	2
ghi01240	Biosynthesis of cofactors	2
ghi04122	Sulfur relay system	2
ghi00770	Pantothenate and CoA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03022	Basal transcription factors	3
bna03420	Nucleotide excision repair	3
bna04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03013	Nucleocytoplasmic transport	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00280	Valine, leucine and isoleucine degradation	2
nta00650	Butanoate metabolism	2
nta04146	Peroxisome	2
nta00240	Pyrimidine metabolism	2
nta01232	Nucleotide metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00240	Pyrimidine metabolism	4
nta01232	Nucleotide metabolism	4
nta00908	Zeatin biosynthesis	2
nta04082	Neuroactive ligand signaling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03040	Spliceosome	8
tae03013	Nucleocytoplasmic transport	4
tae03015	mRNA surveillance pathway	4
tae04141	Protein processing in endoplasmic reticulum	4
tae04144	Endocytosis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00900	Terpenoid backbone biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00190	Oxidative phosphorylation	3
tae00240	Pyrimidine metabolism	3
tae00900	Terpenoid backbone biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04144	Endocytosis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00510	N-Glycan biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03040	Spliceosome	2

Expression

Expression pattern

Entrez Gene ID^*

7474625

100807426

100797408

25500039

837545

103839183

100255283

107899174

107895130

106427546

102625696

101262868

102593848

107816425

107800740

4324143

100383224

123091740

123086304

123096723

123448227

8086045

8085174

100838632

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 7474625 (ppo-u.5 coexpression data)

Top 50 enrichment test to 7474625 (ppo-u.5 coexpression data)


Species	ppo	gma	mtr	ath	bra	vvi	ghi	bna	cit	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	3	2	1	1	1	1	2	1	1	1	1	2	1	1	3	1	2	1	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 7474625 (ppo-u.5 coexpression data)

Top 50 enrichment test to 7474625 (ppo-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**