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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   7478683   malate dehydrogenase, glyoxysomal 
 ppo-r.4   7478683   malate dehydrogenase, glyoxysomal 
 ppo-u.5   7465546   malate dehydrogenase, glyoxysomal 
 ppo-u.5   7469671   malate dehydrogenase, glyoxysomal 
 gma-u.5   100170735   peroxisomal malate dehydrogenase 
 gma-u.5   732641   malate dehydrogenase, glyoxysomal 
 gma-u.5   100799793   malate dehydrogenase, glyoxysomal-like 
 mtr-u.5   11420535   malate dehydrogenase, glyoxysomal 
 mtr-u.5   11405683   malate dehydrogenase 2, peroxisomal 
 ath-u.5   PMDH1   peroxisomal NAD-malate dehydrogenase 1 
 ath-u.5   PMDH2   peroxisomal NAD-malate dehydrogenase 2 
 vvi-u.5   100232924   malate dehydrogenase, glyoxysomal 
 vvi-u.5   100260994   malate dehydrogenase, glyoxysomal 
 sly-u.5   gMDH   glyoxisomal malate dehydrogenase 
 sly-u.5   101249428   malate dehydrogenase, glyoxysomal 
 osa-u.5   4352871   malate dehydrogenase, glyoxysomal-like 
 osa-u.5   4334274   malate dehydrogenase, glyoxysomal-like 
 zma-u.5   100282134   malate dehydrogenase, glyoxysomal 
 zma-u.5   100193491   uncharacterized LOC100193491 

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Top 50 coexpressed genes to 7478683 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7478683 (ppo-u.5 coexpression data)

CoexMap"7478683"


ppoLOC7478683 | Entrez gene ID : 7478683    
Species ppo gma mtr ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 4 3 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG pop00020 [list] [network] Citrate cycle (TCA cycle) (73 genes)
pop00270 [list] [network] Cysteine and methionine metabolism (144 genes)
pop00566 [list] [network] Sulfoquinovose metabolism (18 genes)
pop00620 [list] [network] Pyruvate metabolism (136 genes)
pop00630 [list] [network] Glyoxylate and dicarboxylate metabolism (100 genes)
pop00710 [list] [network] Carbon fixation by Calvin cycle (101 genes)
pop01200 [list] [network] Carbon metabolism (347 genes)
GO BP
GO:0006108 [list] [network] malate metabolic process  (25 genes)  IEA  
GO:0006099 [list] [network] tricarboxylic acid cycle  (61 genes)  IEA  
GO CC
GO:0009507 [list] [network] chloroplast  (718 genes)  IEA  
GO:0005737 [list] [network] cytoplasm  (6111 genes)  IEA  
GO MF
GO:0030060 [list] [network] L-malate dehydrogenase (NAD+) activity  (16 genes)  IEA  
Protein XP_002298801.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 4,  pero 4,  cyto_pero 4  (predict for XP_002298801.1)
Subcellular
localization
TargetP
other 4,  chlo 3  (predict for XP_002298801.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
7478683

.
ppo-r.4
for
7478683

.
ppo-u.5
for
7465546

.
ppo-u.5
for
7469671

.
gma-u.5
for
100170735

.
gma-u.5
for
732641

.
gma-u.5
for
100799793

.
mtr-u.5
for
11420535

.
mtr-u.5
for
11405683

.
ath-u.5
for
PMDH1

.
ath-u.5
for
PMDH2

.
vvi-u.5
for
100232924

.
vvi-u.5
for
100260994

.
sly-u.5
for
gMDH

.
sly-u.5
for
101249428

.
osa-u.5
for
4352871

.
osa-u.5
for
4334274

.
zma-u.5
for
100282134

.
zma-u.5
for
100193491

.


Ortholog ID: 3198
Species ath ath gma gma sly sly osa osa zma zma bra bra vvi vvi ppo ppo mtr mtr tae tae hvu hvu ghi ghi bna bna cre sbi sbi sot sot cit cit bdi bdi nta nta
Symbol PMDH2 PMDH1 LOC100799793 LOC732641 gMDH LOC101249428 LOC4352871 LOC4334274 LOC100282134 LOC100193491 LOC103847223 LOC103864390 LOC100260994 LOC100232924 LOC7465546 LOC7469671 LOC11405683 LOC11420535 LOC123119122 LOC123101999 LOC123400199 LOC123452448 LOC107935268 LOC107922020 LOC106392118 LOC106382950 CHLRE_10g423250v5 LOC110430391 LOC8065238 LOC102595203 LOC102586271 LOC102622394 LOC102608370 LOC100832576 LOC100841882 LOC107804686 LOC107787080
Function* peroxisomal NAD-malate dehydrogenase 2 peroxisomal NAD-malate dehydrogenase 1 malate dehydrogenase, glyoxysomal-like malate dehydrogenase, glyoxysomal glyoxisomal malate dehydrogenase malate dehydrogenase, glyoxysomal malate dehydrogenase, glyoxysomal-like malate dehydrogenase, glyoxysomal-like malate dehydrogenase, glyoxysomal uncharacterized LOC100193491 malate dehydrogenase 2, glyoxysomal malate dehydrogenase 1, peroxisomal malate dehydrogenase, glyoxysomal malate dehydrogenase, glyoxysomal malate dehydrogenase, glyoxysomal malate dehydrogenase, glyoxysomal malate dehydrogenase 2, peroxisomal malate dehydrogenase, glyoxysomal malate dehydrogenase, glyoxysomal malate dehydrogenase, glyoxysomal malate dehydrogenase, glyoxysomal malate dehydrogenase, glyoxysomal-like malate dehydrogenase, glyoxysomal malate dehydrogenase 2, peroxisomal malate dehydrogenase 1, peroxisomal malate dehydrogenase 2, glyoxysomal uncharacterized protein malate dehydrogenase, glyoxysomal-like malate dehydrogenase, glyoxysomal malate dehydrogenase, glyoxysomal malate dehydrogenase, glyoxysomal-like malate dehydrogenase, glyoxysomal malate dehydrogenase, glyoxysomal malate dehydrogenase, glyoxysomal malate dehydrogenase, glyoxysomal malate dehydrogenase, glyoxysomal-like malate dehydrogenase, glyoxysomal
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01200 Carbon metabolism 10
ath00630 Glyoxylate and dicarboxylate metabolism 6
ath00710 Carbon fixation by Calvin cycle 6
ath00260 Glycine, serine and threonine metabolism 3
ath01230 Biosynthesis of amino acids 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01200 Carbon metabolism 6
ath04146 Peroxisome 5
ath00071 Fatty acid degradation 5
ath01212 Fatty acid metabolism 5
ath00020 Citrate cycle (TCA cycle) 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00630 Glyoxylate and dicarboxylate metabolism 8
gma01200 Carbon metabolism 8
gma00260 Glycine, serine and threonine metabolism 5
gma00710 Carbon fixation by Calvin cycle 5
gma00250 Alanine, aspartate and glutamate metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00010 Glycolysis / Gluconeogenesis 6
gma01200 Carbon metabolism 6
gma00071 Fatty acid degradation 5
gma01230 Biosynthesis of amino acids 5
gma00592 alpha-Linolenic acid metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01200 Carbon metabolism 7
sly00630 Glyoxylate and dicarboxylate metabolism 6
sly00260 Glycine, serine and threonine metabolism 4
sly00670 One carbon pool by folate 4
sly00010 Glycolysis / Gluconeogenesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01200 Carbon metabolism 6
sly01230 Biosynthesis of amino acids 3
sly00071 Fatty acid degradation 3
sly01212 Fatty acid metabolism 3
sly04146 Peroxisome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa01200 Carbon metabolism 9
osa04146 Peroxisome 6
osa00071 Fatty acid degradation 5
osa01212 Fatty acid metabolism 5
osa00592 alpha-Linolenic acid metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa01200 Carbon metabolism 7
osa00630 Glyoxylate and dicarboxylate metabolism 6
osa00710 Carbon fixation by Calvin cycle 3
osa00260 Glycine, serine and threonine metabolism 3
osa04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00195 Photosynthesis 3
zma00620 Pyruvate metabolism 2
zma00710 Carbon fixation by Calvin cycle 2
zma01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00071 Fatty acid degradation 4
zma01212 Fatty acid metabolism 4
zma01200 Carbon metabolism 4
zma00280 Valine, leucine and isoleucine degradation 3
zma00630 Glyoxylate and dicarboxylate metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra01200 Carbon metabolism 5
bra00630 Glyoxylate and dicarboxylate metabolism 4
bra00710 Carbon fixation by Calvin cycle 3
bra00020 Citrate cycle (TCA cycle) 2
bra00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00071 Fatty acid degradation 5
bra01212 Fatty acid metabolism 5
bra00410 beta-Alanine metabolism 4
bra00592 alpha-Linolenic acid metabolism 4
bra00240 Pyrimidine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00270 Cysteine and methionine metabolism 2
vvi04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00630 Glyoxylate and dicarboxylate metabolism 4
vvi01200 Carbon metabolism 3
vvi00260 Glycine, serine and threonine metabolism 2
vvi00670 One carbon pool by folate 2
vvi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01230 Biosynthesis of amino acids 7
ppo00400 Phenylalanine, tyrosine and tryptophan biosynthesis 6
ppo04146 Peroxisome 3
ppo00999 Biosynthesis of various plant secondary metabolites 2
ppo00071 Fatty acid degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01200 Carbon metabolism 8
ppo00630 Glyoxylate and dicarboxylate metabolism 7
ppo00710 Carbon fixation by Calvin cycle 6
ppo00260 Glycine, serine and threonine metabolism 4
ppo01230 Biosynthesis of amino acids 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr01200 Carbon metabolism 6
mtr00630 Glyoxylate and dicarboxylate metabolism 4
mtr00710 Carbon fixation by Calvin cycle 3
mtr01230 Biosynthesis of amino acids 3
mtr00260 Glycine, serine and threonine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00020 Citrate cycle (TCA cycle) 3
mtr00190 Oxidative phosphorylation 3
mtr01200 Carbon metabolism 3
mtr00270 Cysteine and methionine metabolism 2
mtr00566 Sulfoquinovose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04141 Protein processing in endoplasmic reticulum 3
tae00020 Citrate cycle (TCA cycle) 3
tae00270 Cysteine and methionine metabolism 3
tae00566 Sulfoquinovose metabolism 3
tae00620 Pyruvate metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04141 Protein processing in endoplasmic reticulum 3
tae00020 Citrate cycle (TCA cycle) 3
tae00270 Cysteine and methionine metabolism 3
tae00566 Sulfoquinovose metabolism 3
tae00620 Pyruvate metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00270 Cysteine and methionine metabolism 2
hvu00071 Fatty acid degradation 2
hvu00592 alpha-Linolenic acid metabolism 2
hvu01212 Fatty acid metabolism 2
hvu00280 Valine, leucine and isoleucine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00630 Glyoxylate and dicarboxylate metabolism 4
hvu01200 Carbon metabolism 4
hvu00260 Glycine, serine and threonine metabolism 4
hvu00195 Photosynthesis 2
hvu00020 Citrate cycle (TCA cycle) 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00500 Starch and sucrose metabolism 3
ghi00020 Citrate cycle (TCA cycle) 2
ghi00270 Cysteine and methionine metabolism 2
ghi00566 Sulfoquinovose metabolism 2
ghi00620 Pyruvate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi01200 Carbon metabolism 5
ghi00710 Carbon fixation by Calvin cycle 4
ghi00910 Nitrogen metabolism 3
ghi00630 Glyoxylate and dicarboxylate metabolism 3
ghi00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00071 Fatty acid degradation 10
bna01212 Fatty acid metabolism 10
bna00592 alpha-Linolenic acid metabolism 8
bna01200 Carbon metabolism 6
bna04146 Peroxisome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00630 Glyoxylate and dicarboxylate metabolism 7
bna01200 Carbon metabolism 5
bna00020 Citrate cycle (TCA cycle) 4
bna00270 Cysteine and methionine metabolism 4
bna00566 Sulfoquinovose metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre04146 Peroxisome 9
cre00071 Fatty acid degradation 8
cre01212 Fatty acid metabolism 8
cre01200 Carbon metabolism 8
cre00592 alpha-Linolenic acid metabolism 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi01240 Biosynthesis of cofactors 3
sbi00620 Pyruvate metabolism 2
sbi01200 Carbon metabolism 2
sbi00010 Glycolysis / Gluconeogenesis 2
sbi00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00280 Valine, leucine and isoleucine degradation 5
sbi01212 Fatty acid metabolism 3
sbi00640 Propanoate metabolism 2
sbi01210 2-Oxocarboxylic acid metabolism 2
sbi00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot01200 Carbon metabolism 6
sot00071 Fatty acid degradation 5
sot01212 Fatty acid metabolism 5
sot04146 Peroxisome 4
sot00410 beta-Alanine metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00630 Glyoxylate and dicarboxylate metabolism 6
sot01200 Carbon metabolism 5
sot00260 Glycine, serine and threonine metabolism 3
sot00220 Arginine biosynthesis 2
sot00250 Alanine, aspartate and glutamate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit01200 Carbon metabolism 10
cit00630 Glyoxylate and dicarboxylate metabolism 5
cit00710 Carbon fixation by Calvin cycle 5
cit00260 Glycine, serine and threonine metabolism 3
cit04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit01200 Carbon metabolism 6
cit00020 Citrate cycle (TCA cycle) 5
cit00785 Lipoic acid metabolism 4
cit01210 2-Oxocarboxylic acid metabolism 4
cit00620 Pyruvate metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00190 Oxidative phosphorylation 2
bdi04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi01200 Carbon metabolism 8
bdi00630 Glyoxylate and dicarboxylate metabolism 7
bdi00260 Glycine, serine and threonine metabolism 4
bdi04146 Peroxisome 3
bdi00710 Carbon fixation by Calvin cycle 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta01200 Carbon metabolism 5
nta04626 Plant-pathogen interaction 4
nta00620 Pyruvate metabolism 4
nta00710 Carbon fixation by Calvin cycle 4
nta00630 Glyoxylate and dicarboxylate metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03050 Proteasome 5
nta04120 Ubiquitin mediated proteolysis 2
nta00020 Citrate cycle (TCA cycle) 2
nta00270 Cysteine and methionine metabolism 2
nta00566 Sulfoquinovose metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 830825 816808 100799793 732641 778286 101249428 4352871 4334274 100282134 100193491 103847223 103864390 100260994 100232924 7465546 7469671 11405683 11420535 123119122 123101999 123400199 123452448 107935268 107922020 106392118 106382950 5728232 110430391 8065238 102595203 102586271 102622394 102608370 100832576 100841882 107804686 107787080
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