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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   7480437   ubiquitin-NEDD8-like protein RUB1 
 ppo-r.4   7480437   ubiquitin-NEDD8-like protein RUB1 
 ppo-m.4   7480437   ubiquitin-NEDD8-like protein RUB1 
 ppo-u.5   7462564   ubiquitin-NEDD8-like protein RUB2 
 ppo-u.5   7468753   ubiquitin-NEDD8-like protein RUB2 
 ppo-u.5   7464783   ubiquitin-NEDD8-like protein RUB2 
 gma-u.5   102664645   polyubiquitin 
 gma-u.5   100800163   ubiquitin-NEDD8-like protein RUB1-like 
 gma-u.5   100794152   ubiquitin-NEDD8-like protein RUB2 
 mtr-u.5   25492777   ubiquitin-NEDD8-like protein RUB2 
 mtr-u.5   11426787   ubiquitin-NEDD8-like protein RUB2 
 ath-u.5   UBQ7   ubiquitin 7 
 ath-u.5   RUB1   uncharacterized protein 
 vvi-u.5   100241051   ubiquitin-NEDD8-like protein RUB2 
 sly-u.5   UBQ7   ubiquitin 
 osa-u.5   4341684   ubiquitin-NEDD8-like protein RUB2 
 osa-u.5   4347085   ubiquitin-NEDD8-like protein RUB1 
 osa-u.5   4341814   polyubiquitin 
 zma-u.5   100282222   uncharacterized LOC100282222 
 zma-u.5   103629697   ubiquitin-NEDD8-like protein RUB2 
 zma-u.5   103635660   ubiquitin-NEDD8-like protein RUB2 

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Top 50 coexpressed genes to 7480437 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7480437 (ppo-u.5 coexpression data)

CoexMap"7480437"


ppoLOC7480437 | Entrez gene ID : 7480437    
Species ppo gma mtr ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 6 3 2 2 1 1 3 3 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0019941 [list] [network] modification-dependent protein catabolic process  (368 genes)  IEA  
GO:0016567 [list] [network] protein ubiquitination  (417 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (3662 genes)  IEA  
GO:0005737 [list] [network] cytoplasm  (6111 genes)  IEA  
GO MF
GO:0031386 [list] [network] protein tag activity  (34 genes)  IEA  
GO:0031625 [list] [network] ubiquitin protein ligase binding  (47 genes)  IEA  
Protein XP_002307191.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 4,  cyto_nucl 4,  chlo 1,  nucl 1,  plas 1  (predict for XP_002307191.1)
Subcellular
localization
TargetP
other 8  (predict for XP_002307191.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
7480437

.
ppo-r.4
for
7480437

.
ppo-m.4
for
7480437

.
ppo-u.5
for
7462564

.
ppo-u.5
for
7468753

.
ppo-u.5
for
7464783

.
gma-u.5
for
102664645

.
gma-u.5
for
100800163

.
gma-u.5
for
100794152

.
mtr-u.5
for
25492777

.
mtr-u.5
for
11426787

.
ath-u.5
for
UBQ7

.
ath-u.5
for
RUB1

.
vvi-u.5
for
100241051

.
sly-u.5
for
UBQ7

.
osa-u.5
for
4341684

.
osa-u.5
for
4347085

.
osa-u.5
for
4341814

.
zma-u.5
for
100282222

.
zma-u.5
for
103629697

.
zma-u.5
for
103635660

.


Ortholog ID: 1536
Species ath ath gma gma sly osa osa zma zma bra bra vvi ppo ppo mtr mtr tae tae hvu hvu ghi ghi bna bna cre sbi sbi sot cit cit bdi bdi nta nta
Symbol RUB1 UBQ7 LOC100794152 LOC100800163 UBQ7 LOC4341814 LOC4341684 LOC100282222 LOC103629697 LOC103828780 LOC103867338 LOC100241051 LOC7464783 LOC7480437 LOC25492777 LOC11426787 LOC123143947 LOC123167506 LOC123439383 LOC123410501 LOC107937146 LOC107937166 LOC106430500 LOC125585477 CHLRE_09g396400v5 LOC8062113 LOC8069343 LOC102587939 LOC102610027 LOC102619604 LOC100842080 LOC100838366 LOC107823977 LOC107767149
Function* uncharacterized protein ubiquitin 7 ubiquitin-NEDD8-like protein RUB2 ubiquitin-NEDD8-like protein RUB1-like ubiquitin polyubiquitin ubiquitin-NEDD8-like protein RUB2 uncharacterized LOC100282222 ubiquitin-NEDD8-like protein RUB2 ubiquitin-NEDD8-like protein RUB1 ubiquitin-NEDD8-like protein RUB2 ubiquitin-NEDD8-like protein RUB2 ubiquitin-NEDD8-like protein RUB2 ubiquitin-NEDD8-like protein RUB1 ubiquitin-NEDD8-like protein RUB2 ubiquitin-NEDD8-like protein RUB2 polyubiquitin ubiquitin-NEDD8-like protein RUB2 ubiquitin-NEDD8-like protein RUB2 ubiquitin-NEDD8-like protein RUB2 ubiquitin-NEDD8-like protein RUB2 ubiquitin-NEDD8-like protein RUB2 polyubiquitin polyubiquitin uncharacterized protein ubiquitin-NEDD8-like protein RUB1 ubiquitin-NEDD8-like protein RUB2 ubiquitin-NEDD8-like protein RUB2 ubiquitin-NEDD8-like protein RUB2 ubiquitin-NEDD8-like protein RUB2 ubiquitin-NEDD8-like protein RUB1 ubiquitin-NEDD8-like protein RUB2 ubiquitin-NEDD8-like protein RUB2 ubiquitin-NEDD8-like protein RUB2
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03013 Nucleocytoplasmic transport 3
ath04120 Ubiquitin mediated proteolysis 2
ath03008 Ribosome biogenesis in eukaryotes 2
ath03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03013 Nucleocytoplasmic transport 4
ath04120 Ubiquitin mediated proteolysis 2
ath03008 Ribosome biogenesis in eukaryotes 2
ath03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 6
gma03013 Nucleocytoplasmic transport 6
gma03250 Viral life cycle - HIV-1 6
gma03010 Ribosome 4
gma04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 7
gma03013 Nucleocytoplasmic transport 7
gma03250 Viral life cycle - HIV-1 7
gma04144 Endocytosis 3
gma03050 Proteasome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00190 Oxidative phosphorylation 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 2
zma03013 Nucleocytoplasmic transport 2
zma03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04145 Phagosome 3
bra00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03050 Proteasome 2
bra04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03050 Proteasome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03050 Proteasome 5
ppo03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04141 Protein processing in endoplasmic reticulum 2
ppo00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 4
mtr04142 Lysosome 2
mtr03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03050 Proteasome 6
mtr00190 Oxidative phosphorylation 5
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04120 Ubiquitin mediated proteolysis 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 4
tae03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00380 Tryptophan metabolism 2
ghi00940 Phenylpropanoid biosynthesis 2
ghi04141 Protein processing in endoplasmic reticulum 2
ghi00230 Purine metabolism 2
ghi00730 Thiamine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03020 RNA polymerase 2
ghi00380 Tryptophan metabolism 2
ghi00940 Phenylpropanoid biosynthesis 2
ghi04141 Protein processing in endoplasmic reticulum 2
ghi00260 Glycine, serine and threonine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04120 Ubiquitin mediated proteolysis 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04120 Ubiquitin mediated proteolysis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03010 Ribosome 9
cre04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi01200 Carbon metabolism 5
sbi01230 Biosynthesis of amino acids 5
sbi00010 Glycolysis / Gluconeogenesis 4
sbi00230 Purine metabolism 2
sbi00250 Alanine, aspartate and glutamate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 2
sbi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00190 Oxidative phosphorylation 5
sot03050 Proteasome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03050 Proteasome 3
cit03018 RNA degradation 3
cit03040 Spliceosome 3
cit04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04144 Endocytosis 3
bdi03050 Proteasome 2
bdi04145 Phagosome 2
bdi04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 4
bdi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03050 Proteasome 3
nta04144 Endocytosis 2
nta04130 SNARE interactions in vesicular transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03013 Nucleocytoplasmic transport 5
nta03008 Ribosome biogenesis in eukaryotes 4
nta03250 Viral life cycle - HIV-1 4
nta03050 Proteasome 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 840023 818132 100794152 100800163 101247072 4341814 4341684 100282222 103629697 103828780 103867338 100241051 7464783 7480437 25492777 11426787 123143947 123167506 123439383 123410501 107937146 107937166 106430500 125585477 5720164 8062113 8069343 102587939 102610027 102619604 100842080 100838366 107823977 107767149
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