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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   7480941   photosystem II core complex proteins psbY, chloroplastic 
 ppo-r.4   7480941   photosystem II core complex proteins psbY, chloroplastic 
 ppo-m.4   7480941   photosystem II core complex proteins psbY, chloroplastic 
 ppo-u.5   7460727   photosystem II core complex proteins psbY, chloroplastic 
 gma-u.5   100779397   photosystem II core complex proteins psbY, chloroplastic-like 
 gma-u.5   100814665   photosystem II core complex proteins psbY, chloroplastic 
 mtr-u.5   25501820   photosystem II core complex proteins psbY, chloroplastic 
 mtr-u.5   11416110   photosystem II core complex proteins psbY, chloroplastic 
 ath-u.5   PSBY   photosystem II BY 
 vvi-u.5   100252545   photosystem II core complex proteins psbY, chloroplastic 
 sly-u.5   101259494   photosystem II reaction center proteins PsbY, chloroplastic 
 osa-u.5   4344539   photosystem II core complex proteins psbY, chloroplastic 
 zma-u.5   100280994   photosystem II core complex proteins psbY 
 zma-u.5   100281349   photosystem II core complex proteins psbY 

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Top 50 coexpressed genes to 7480941 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7480941 (ppo-u.5 coexpression data)

CoexMap"7480941"


ppoLOC7480941 | Entrez gene ID : 7480941    
Species ppo gma mtr ath vvi sly osa zma cre ghi cit hvu bdi sot bra sbi tae nta bna
Paralog 4 2 2 1 1 1 1 2 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG pop00195 [list] [network] Photosynthesis (104 genes)
GO BP
GO:0045454 [list] [network] cell redox homeostasis  (23 genes)  IEA  
GO:0015979 [list] [network] photosynthesis  (119 genes)  IEA  
GO CC
GO:0009523 [list] [network] photosystem II  (39 genes)  IEA  
GO:0009534 [list] [network] chloroplast thylakoid  (147 genes)  IEA  
GO:0016020 [list] [network] membrane  (3780 genes)  IEA  
GO MF
GO:0030145 [list] [network] manganese ion binding  (73 genes)  IEA  
Protein XP_002312650.1 [sequence] [blastp]
Subcellular
localization
wolf
plas 4,  chlo 2,  cyto 1,  nucl 1,  chlo_mito 1,  cysk_nucl 1  (predict for XP_002312650.1)
Subcellular
localization
TargetP
chlo 6,  other 3  (predict for XP_002312650.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
7480941

.
ppo-r.4
for
7480941

.
ppo-m.4
for
7480941

.
ppo-u.5
for
7460727

.
gma-u.5
for
100779397

.
gma-u.5
for
100814665

.
mtr-u.5
for
25501820

.
mtr-u.5
for
11416110

.
ath-u.5
for
PSBY

.
vvi-u.5
for
100252545

.
sly-u.5
for
101259494

.
osa-u.5
for
4344539

.
zma-u.5
for
100280994

.
zma-u.5
for
100281349

.


Ortholog ID: 5912
Species ath gma sly osa zma zma bra bra vvi ppo ppo mtr mtr tae tae hvu ghi ghi bna bna cre sbi sot cit cit bdi nta nta
Symbol PSBY LOC100814665 LOC101259494 LOC4344539 LOC100281349 LOC100280994 LOC103852422 LOC103831199 LOC100252545 LOC7480941 LOC7460727 LOC11416110 LOC25501820 LOC123157070 LOC123165132 LOC123411185 LOC107920999 LOC107916725 LOC125589011 LOC125585712 CHLRE_10g452100v5 LOC8074044 LOC102603823 LOC102630675 LOC107176823 LOC100842253 LOC107813483 LOC107817200
Function* photosystem II BY photosystem II core complex proteins psbY, chloroplastic photosystem II reaction center proteins PsbY, chloroplastic photosystem II core complex proteins psbY, chloroplastic photosystem II core complex proteins psbY photosystem II core complex proteins psbY photosystem II core complex proteins psbY, chloroplastic photosystem II core complex proteins psbY, chloroplastic photosystem II core complex proteins psbY, chloroplastic photosystem II core complex proteins psbY, chloroplastic photosystem II core complex proteins psbY, chloroplastic photosystem II core complex proteins psbY, chloroplastic photosystem II core complex proteins psbY, chloroplastic photosystem II core complex proteins psbY, chloroplastic photosystem II core complex proteins psbY, chloroplastic photosystem II core complex proteins psbY, chloroplastic photosystem II core complex proteins psbY, chloroplastic photosystem II core complex proteins psbY, chloroplastic photosystem II core complex proteins psbY, chloroplastic-like photosystem II core complex proteins psbY, chloroplastic-like uncharacterized protein photosystem II core complex proteins psbY, chloroplastic photosystem II core complex proteins psbY, chloroplastic photosystem II core complex proteins psbY, chloroplastic photosystem II core complex proteins psbY, chloroplastic-like photosystem II core complex proteins psbY, chloroplastic photosystem II reaction center proteins PsbY, chloroplastic-like photosystem II reaction center proteins PsbY, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00195 Photosynthesis 15
ath00196 Photosynthesis - antenna proteins 4
ath00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00195 Photosynthesis 10
gma00196 Photosynthesis - antenna proteins 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00195 Photosynthesis 14
sly00190 Oxidative phosphorylation 2
sly00710 Carbon fixation by Calvin cycle 2
sly01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00195 Photosynthesis 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00195 Photosynthesis 12
zma00196 Photosynthesis - antenna proteins 3
zma00710 Carbon fixation by Calvin cycle 2
zma01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00195 Photosynthesis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00195 Photosynthesis 7
bra00190 Oxidative phosphorylation 2
bra00710 Carbon fixation by Calvin cycle 2
bra01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00195 Photosynthesis 8
bra00196 Photosynthesis - antenna proteins 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00195 Photosynthesis 13
vvi00196 Photosynthesis - antenna proteins 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00195 Photosynthesis 10
ppo00196 Photosynthesis - antenna proteins 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00195 Photosynthesis 11
ppo00196 Photosynthesis - antenna proteins 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00195 Photosynthesis 12
mtr00196 Photosynthesis - antenna proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00195 Photosynthesis 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00195 Photosynthesis 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00195 Photosynthesis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01200 Carbon metabolism 10
hvu00630 Glyoxylate and dicarboxylate metabolism 7
hvu00710 Carbon fixation by Calvin cycle 6
hvu00260 Glycine, serine and threonine metabolism 3
hvu00670 One carbon pool by folate 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00196 Photosynthesis - antenna proteins 8
ghi00195 Photosynthesis 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00196 Photosynthesis - antenna proteins 10
ghi00195 Photosynthesis 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00195 Photosynthesis 9
bna00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00195 Photosynthesis 9
bna00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00195 Photosynthesis 5
cre00196 Photosynthesis - antenna proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00195 Photosynthesis 12
sbi00196 Photosynthesis - antenna proteins 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00195 Photosynthesis 10
sot00196 Photosynthesis - antenna proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00195 Photosynthesis 9
cit00196 Photosynthesis - antenna proteins 6
cit00710 Carbon fixation by Calvin cycle 2
cit01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04141 Protein processing in endoplasmic reticulum 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00195 Photosynthesis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00195 Photosynthesis 6
nta00190 Oxidative phosphorylation 4
nta00860 Porphyrin metabolism 2
nta03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00195 Photosynthesis 4
nta00190 Oxidative phosphorylation 2
nta00860 Porphyrin metabolism 2
nta03010 Ribosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 843099 100814665 101259494 4344539 100281349 100280994 103852422 103831199 100252545 7480941 7460727 11416110 25501820 123157070 123165132 123411185 107920999 107916725 125589011 125585712 5724072 8074044 102603823 102630675 107176823 100842253 107813483 107817200
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