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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   7484647   WD repeat-containing protein VIP3 
 ppo-r.4   7484647   WD repeat-containing protein VIP3 
 ppo-m.4   7484647   WD repeat-containing protein VIP3 
 gma-u.5   100791764   WD repeat-containing protein VIP3 
 gma-u.5   100790793   WD repeat-containing protein VIP3 
 mtr-u.5   25494198   WD repeat-containing protein VIP3 
 ath-u.5   VIP3   Transducin/WD40 repeat-like superfamily protein 
 vvi-u.5   100257752   WD repeat-containing protein VIP3 
 sly-u.5   101260155   WD repeat-containing protein VIP3 
 sly-u.5   101246693   WD repeat-containing protein 
 osa-u.5   4351059   WD repeat-containing protein VIP3 
 zma-u.5   100192788   uncharacterized LOC100192788 

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Top 50 coexpressed genes to 7484647 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7484647 (ppo-u.5 coexpression data)

CoexMap"7484647"


ppoLOC7484647 | Entrez gene ID : 7484647    
Species ppo gma mtr ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 3 2 1 1 1 2 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG pop03018 [list] [network] RNA degradation (133 genes)
GO BP
GO CC
GO:0016593 [list] [network] Cdc73/Paf1 complex  (9 genes)  IEA  
GO MF
GO:0005515 [list] [network] protein binding  (4916 genes)  IEA  
Protein XP_002309202.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 5,  mito 2,  chlo 1,  nucl 1,  pero 1  (predict for XP_002309202.1)
Subcellular
localization
TargetP
other 7  (predict for XP_002309202.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
7484647

.
ppo-r.4
for
7484647

.
ppo-m.4
for
7484647

.
gma-u.5
for
100791764

.
gma-u.5
for
100790793

.
mtr-u.5
for
25494198

.
ath-u.5
for
VIP3

.
vvi-u.5
for
100257752

.
sly-u.5
for
101260155

.
sly-u.5
for
101246693

.
osa-u.5
for
4351059

.
zma-u.5
for
100192788

.


Ortholog ID: 6058
Species ath gma gma sly sly osa zma bra bra vvi ppo mtr tae tae hvu ghi ghi bna bna cre sbi sbi sot sot cit bdi nta nta
Symbol VIP3 LOC100790793 LOC100791764 LOC101260155 LOC101246693 LOC4351059 LOC100192788 LOC103834702 LOC103853257 LOC100257752 LOC7484647 LOC25494198 LOC123096857 LOC123091792 LOC123448407 LOC107897717 LOC107932285 LOC106388756 LOC106390074 CHLRE_11g468377v5 LOC8070186 LOC110429556 LOC102594133 LOC102577595 LOC102628906 LOC100833314 LOC107793953 LOC107771470
Function* Transducin/WD40 repeat-like superfamily protein WD repeat-containing protein VIP3 WD repeat-containing protein VIP3 WD repeat-containing protein VIP3 WD repeat-containing protein WD repeat-containing protein VIP3 uncharacterized LOC100192788 WD repeat-containing protein VIP3-like WD repeat-containing protein VIP3 WD repeat-containing protein VIP3 WD repeat-containing protein VIP3 WD repeat-containing protein VIP3 WD repeat-containing protein VIP3 WD repeat-containing protein VIP3 WD repeat-containing protein VIP3 WD repeat-containing protein VIP3 WD repeat-containing protein VIP3 WD repeat-containing protein VIP3 WD repeat-containing protein VIP3-like uncharacterized protein WD repeat-containing protein VIP3 uncharacterized LOC110429556 WD repeat-containing protein VIP3-like vernalization independence 3-like protein WD repeat-containing protein VIP3 WD repeat-containing protein VIP3 WD repeat-containing protein VIP3-like WD repeat-containing protein VIP3
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03050 Proteasome 4
ath03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03018 RNA degradation 3
gma03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03083 Polycomb repressive complex 4
gma03018 RNA degradation 3
gma03082 ATP-dependent chromatin remodeling 2
gma04120 Ubiquitin mediated proteolysis 2
gma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 4
sly00270 Cysteine and methionine metabolism 2
sly00620 Pyruvate metabolism 2
sly00710 Carbon fixation by Calvin cycle 2
sly01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 9
sly03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03050 Proteasome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03020 RNA polymerase 2
bra03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03050 Proteasome 9
bra03010 Ribosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 16
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 10
mtr04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03020 RNA polymerase 5
tae03018 RNA degradation 3
tae03420 Nucleotide excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03020 RNA polymerase 4
tae03420 Nucleotide excision repair 3
tae03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03050 Proteasome 6
ghi03018 RNA degradation 4
ghi04075 Plant hormone signal transduction 2
ghi04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 6
ghi03020 RNA polymerase 6
ghi03420 Nucleotide excision repair 6
ghi03018 RNA degradation 4
ghi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 4
bna03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03050 Proteasome 4
cre03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 7
sbi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03050 Proteasome 5
sot03010 Ribosome 3
sot03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03050 Proteasome 11
sot03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit01230 Biosynthesis of amino acids 3
cit00190 Oxidative phosphorylation 3
cit00290 Valine, leucine and isoleucine biosynthesis 2
cit00770 Pantothenate and CoA biosynthesis 2
cit01210 2-Oxocarboxylic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00190 Oxidative phosphorylation 4
bdi03040 Spliceosome 4
bdi04142 Lysosome 2
bdi04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03050 Proteasome 4
nta03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 6
nta03050 Proteasome 4
nta03018 RNA degradation 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 829105 100790793 100791764 101260155 101246693 4351059 100192788 103834702 103853257 100257752 7484647 25494198 123096857 123091792 123448407 107897717 107932285 106388756 106390074 5725092 8070186 110429556 102594133 102577595 102628906 100833314 107793953 107771470
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