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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   7488893   DNA repair protein RAD51 homolog 3 
 ppo-r.4   7488893   DNA repair protein RAD51 homolog 3 
 ppo-m.4   7488893   DNA repair protein RAD51 homolog 3 
 gma-u.5   100527406   P-loop NTPase domain superfamily protein 
 mtr-u.5   11446586   DNA repair protein RAD51 homolog 3 
 mtr-u.5   11434081   DNA repair protein RAD51 homolog 3 
 ath-u.5   RAD51C   RAS associated with diabetes protein 51C 
 vvi-u.5   100267711   DNA repair protein RAD51 homolog 3 
 sly-u.5   101266032   DNA repair protein RAD51 homolog 3 
 osa-u.5   4323853   DNA repair protein RAD51 homolog 3 
 zma-u.5   100284087   DNA repair protein RAD51 

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Top 50 coexpressed genes to 7488893 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7488893 (ppo-u.5 coexpression data)

CoexMap"7488893"


ppoLOC7488893 | Entrez gene ID : 7488893    
Species ppo gma mtr ath vvi sly osa zma tae hvu ghi bdi cit bra cre sbi bna nta sot
Paralog 3 1 2 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG pop03440 [list] [network] Homologous recombination (53 genes)
pop03460 [list] [network] Fanconi anemia pathway (47 genes)
GO BP
GO:0000707 [list] [network] meiotic DNA recombinase assembly  (1 genes)  IEA  
GO:0007131 [list] [network] reciprocal meiotic recombination  (37 genes)  IEA  
GO:0006281 [list] [network] DNA repair  (290 genes)  IEA  
GO CC
GO:0033063 [list] [network] Rad51B-Rad51C-Rad51D-XRCC2 complex  (1 genes)  IEA  
GO:0033065 [list] [network] Rad51C-XRCC3 complex  (2 genes)  IEA  
GO:0005657 [list] [network] replication fork  (44 genes)  IEA  
GO MF
GO:0000400 [list] [network] four-way junction DNA binding  (5 genes)  IEA  
GO:0008821 [list] [network] crossover junction DNA endonuclease activity  (8 genes)  IEA  
GO:0140664 [list] [network] ATP-dependent DNA damage sensor activity  (25 genes)  IEA  
GO:0005524 [list] [network] ATP binding  (2559 genes)  IEA  
Protein XP_024440486.2 [sequence] [blastp]
XP_024440487.2 [sequence] [blastp]
XP_024440488.2 [sequence] [blastp]
XP_024440489.2 [sequence] [blastp]
XP_024440490.1 [sequence] [blastp]
XP_024440491.1 [sequence] [blastp]
XP_024440492.1 [sequence] [blastp]
XP_024440493.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 6,  nucl 4  (predict for XP_024440486.2)
cyto 6,  nucl 4  (predict for XP_024440487.2)
cyto 6,  nucl 4  (predict for XP_024440488.2)
cyto 4,  nucl 3,  chlo 1,  mito 1,  plas 1,  cysk 1,  chlo_mito 1,  cysk_plas 1,  mito_plas 1  (predict for XP_024440489.2)
cyto 6,  nucl 3,  cyto_pero 3,  cyto_E.R. 3,  cyto_plas 3  (predict for XP_024440490.1)
cyto 6,  nucl 3,  cyto_pero 3,  cyto_E.R. 3,  cyto_plas 3  (predict for XP_024440491.1)
cyto 5,  nucl 2,  chlo 1,  extr 1  (predict for XP_024440492.1)
cyto 5,  nucl 2,  chlo 1,  extr 1  (predict for XP_024440493.1)
Subcellular
localization
TargetP
other 8  (predict for XP_024440486.2)
other 8  (predict for XP_024440487.2)
other 8  (predict for XP_024440488.2)
other 8  (predict for XP_024440489.2)
other 8  (predict for XP_024440490.1)
other 8  (predict for XP_024440491.1)
other 8  (predict for XP_024440492.1)
other 8  (predict for XP_024440493.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
7488893

.
ppo-r.4
for
7488893

.
ppo-m.4
for
7488893

.
gma-u.5
for
100527406

.
mtr-u.5
for
11446586

.
mtr-u.5
for
11434081

.
ath-u.5
for
RAD51C

.
vvi-u.5
for
100267711

.
sly-u.5
for
101266032

.
osa-u.5
for
4323853

.
zma-u.5
for
100284087

.


Ortholog ID: 10051
Species ath gma sly osa zma vvi ppo mtr mtr hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol RAD51C LOC100527406 LOC101266032 LOC4323853 LOC100284087 LOC100267711 LOC7488893 LOC11446586 LOC11434081 LOC123425728 LOC121204484 LOC107899902 LOC106396109 LOC106450907 CHLRE_02g102500v5 LOC110434196 LOC102588877 LOC102619562 LOC100846302 LOC107785484 LOC107815904
Function* RAS associated with diabetes protein 51C P-loop NTPase domain superfamily protein DNA repair protein RAD51 homolog 3 DNA repair protein RAD51 homolog 3 DNA repair protein RAD51 DNA repair protein RAD51 homolog 3 DNA repair protein RAD51 homolog 3 DNA repair protein RAD51 homolog 3 DNA repair protein RAD51 homolog 3 DNA repair protein RAD51 homolog 3 DNA repair protein RAD51 homolog 3 DNA repair protein RAD51 homolog 3 DNA repair protein RAD51 homolog 3 DNA repair protein RAD51 homolog 3 uncharacterized protein DNA repair protein RAD51 homolog 3 DNA repair protein RAD51 homolog 3 DNA repair protein RAD51 homolog 3 DNA repair protein RAD51 homolog 3 DNA repair protein RAD51 homolog 3-like DNA repair protein RAD51 homolog 3-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03410 Base excision repair 5
ath03030 DNA replication 4
ath03420 Nucleotide excision repair 4
ath03430 Mismatch repair 4
ath03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00190 Oxidative phosphorylation 3
gma00970 Aminoacyl-tRNA biosynthesis 2
gma00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 2
gma00670 One carbon pool by folate 2
gma04981 Folate transport and metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03030 DNA replication 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03440 Homologous recombination 2
mtr03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03440 Homologous recombination 2
mtr03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03440 Homologous recombination 2
ghi03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03440 Homologous recombination 2
ghi03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 4
bna00270 Cysteine and methionine metabolism 2
bna00920 Sulfur metabolism 2
bna01200 Carbon metabolism 2
bna01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 4
bna00270 Cysteine and methionine metabolism 2
bna00920 Sulfur metabolism 2
bna01200 Carbon metabolism 2
bna01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03030 DNA replication 4
cre03410 Base excision repair 2
cre03420 Nucleotide excision repair 2
cre03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03030 DNA replication 9
sot03440 Homologous recombination 4
sot03460 Fanconi anemia pathway 4
sot03420 Nucleotide excision repair 2
sot03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
cit00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03030 DNA replication 4
nta03420 Nucleotide excision repair 4
nta03430 Mismatch repair 4
nta03440 Homologous recombination 4
nta03460 Fanconi anemia pathway 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03440 Homologous recombination 5
nta03460 Fanconi anemia pathway 5
nta03030 DNA replication 2
nta03410 Base excision repair 2
nta03420 Nucleotide excision repair 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 819136 100527406 101266032 4323853 100284087 100267711 7488893 11446586 11434081 123425728 121204484 107899902 106396109 106450907 5725556 110434196 102588877 102619562 100846302 107785484 107815904
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