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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   7489161   protein RRC1 
 ppo-r.4   7489161   protein RRC1 
 ppo-m.4   7489161   protein RRC1 
 ppo-u.5   7465430   protein RRC1 
 gma-u.5   100776093   protein RRC1 
 gma-u.5   100775729   protein RRC1 
 mtr-u.5   11440509   protein RRC1-like 
 ath-u.5   AT5G10800   RNA recognition motif (RRM)-containing protein 
 ath-u.5   RRC1   RNA recognition motif (RRM)-containing protein 
 vvi-u.5   100262865   protein RRC1 
 sly-u.5   101261199   protein RRC1-like 
 osa-u.5   4328504   protein RRC1 
 zma-u.5   103626713   protein RRC1 
 zma-u.5   100304259   uncharacterized LOC100304259 

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Top 50 coexpressed genes to 7489161 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7489161 (ppo-u.5 coexpression data)

CoexMap"7489161"


ppoLOC7489161 | Entrez gene ID : 7489161    
Species ppo gma mtr ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 4 2 1 2 1 1 1 2 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG pop03040 [list] [network] Spliceosome (338 genes)
GO BP
GO:0006396 [list] [network] RNA processing  (703 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (3662 genes)  IEA  
GO MF
GO:0003723 [list] [network] RNA binding  (1480 genes)  IEA  
Protein XP_024459609.2 [sequence] [blastp]
XP_024459610.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 6,  chlo 3,  cyto_nucl 3  (predict for XP_024459609.2)
nucl 9,  cyto 1  (predict for XP_024459610.2)
Subcellular
localization
TargetP
other 7  (predict for XP_024459609.2)
other 8,  chlo 3  (predict for XP_024459610.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
7489161

.
ppo-r.4
for
7489161

.
ppo-m.4
for
7489161

.
ppo-u.5
for
7465430

.
gma-u.5
for
100776093

.
gma-u.5
for
100775729

.
mtr-u.5
for
11440509

.
ath-u.5
for
AT5G10800

.
ath-u.5
for
RRC1

.
vvi-u.5
for
100262865

.
sly-u.5
for
101261199

.
osa-u.5
for
4328504

.
zma-u.5
for
103626713

.
zma-u.5
for
100304259

.


Ortholog ID: 5371
Species ath ath gma gma sly osa zma zma bra vvi ppo ppo mtr tae tae hvu hvu ghi ghi bna bna cre sbi sot cit bdi bdi nta nta
Symbol RRC1 AT5G10800 LOC100775729 LOC100776093 LOC101261199 LOC4328504 LOC100304259 LOC103626713 LOC103837075 LOC100262865 LOC7489161 LOC7465430 LOC11440509 LOC123136556 LOC123123772 LOC123401031 LOC123435379 LOC107961709 LOC107948689 LOC106365996 LOC106365911 CHLRE_03g158150v5 LOC8079403 LOC102583876 LOC102626420 LOC100845412 LOC100843167 LOC107777073 LOC107817815
Function* RNA recognition motif (RRM)-containing protein RNA recognition motif (RRM)-containing protein protein RRC1 protein RRC1 protein RRC1-like protein RRC1 uncharacterized LOC100304259 protein RRC1 protein RRC1 protein RRC1 protein RRC1 protein RRC1 protein RRC1-like protein RRC1 protein RRC1 protein RRC1-like protein RRC1-like protein RRC1 protein RRC1 protein RRC1 protein RRC1 uncharacterized protein protein RRC1 U2 snRNP-associated SURP motif-containing protein-like protein RRC1 protein RRC1 protein RRC1 protein RRC1 protein RRC1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 5
ath03022 Basal transcription factors 2
ath03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 7
gma03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 8
gma03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 2
osa03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 4
zma03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 4
zma03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 4
bra03250 Viral life cycle - HIV-1 3
bra03015 mRNA surveillance pathway 2
bra03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 4
vvi03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 4
ppo03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 4
ppo03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 4
tae03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 9
tae03018 RNA degradation 2
tae00310 Lysine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03250 Viral life cycle - HIV-1 2
hvu04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03250 Viral life cycle - HIV-1 2
sbi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 6
sot03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03013 Nucleocytoplasmic transport 4
bdi03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03013 Nucleocytoplasmic transport 4
bdi03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 3
nta03022 Basal transcription factors 2
nta03013 Nucleocytoplasmic transport 2
nta03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 4
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 832577 830947 100775729 100776093 101261199 4328504 100304259 103626713 103837075 100262865 7489161 7465430 11440509 123136556 123123772 123401031 123435379 107961709 107948689 106365996 106365911 5723030 8079403 102583876 102626420 100845412 100843167 107777073 107817815
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