ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ppo-u.5	7492270	26S proteasome regulatory subunit 7
ppo-r.4	7492270	26S proteasome regulatory subunit 7
ppo-m.4	7492270	26S proteasome regulatory subunit 7
ppo-u.5	18109521	26S proteasome regulatory subunit 7
ppo-u.5	18094660	26S proteasome regulatory subunit 7 homolog A
gma-u.5	100796358	26S protease regulatory subunit 7-like
gma-u.5	100808239	26S proteasome regulatory subunit 7
gma-u.5	100820271	26S proteasome regulatory subunit 7
mtr-u.5	11421964	26S proteasome regulatory subunit 7
mtr-u.5	11443391	26S proteasome regulatory subunit 7
ath-u.5	RPT1A	regulatory particle triple-A 1A
ath-u.5	AT1G53780	26S proteasome regulatory complex ATPase
vvi-u.5	100233125	26S proteasome regulatory subunit 7
sly-u.5	101268371	26S proteasome regulatory subunit 7 homolog A
sly-u.5	101262927	26S proteasome regulatory subunit 7 homolog A
osa-u.5	4330943	26S proteasome regulatory subunit 7A-like
osa-u.5	4340376	26S proteasome regulatory subunit 7A-like
zma-u.5	100274064	uncharacterized LOC100274064
zma-u.5	100272769	uncharacterized LOC100272769

Top 50 coexpressed genes to 7492270 (ppo-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 7492270 (ppo-u.5 coexpression data)

CoexMap"7492270"

[Cytoscape]

Annotation

functional annotation

KEGG

pop03050 [list] [network] Proteasome (82 genes)

GO BP

GO:0043161 [list] [network] proteasome-mediated ubiquitin-dependent protein catabolic process

(182 genes)

IEA

GO CC

GO:0008540 [list] [network] proteasome regulatory particle, base subcomplex

(25 genes)

IEA

GO MF

GO:0036402 [list] [network] proteasome-activating activity	(18 genes)	IEA
GO:0016887 [list] [network] ATP hydrolysis activity	(550 genes)	IEA
GO:0005524 [list] [network] ATP binding	(2559 genes)	IEA

Protein

XP_002308501.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 3, chlo 2, cysk 2, cyto_pero 2

(predict for XP_002308501.1)

Subcellular
localization
TargetP

other 9

(predict for XP_002308501.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ppo-u.5 for 7492270 .	ppo-r.4 for 7492270 .	ppo-m.4 for 7492270 .	ppo-u.5 for 18109521 .	ppo-u.5 for 18094660 .	gma-u.5 for 100796358 .	gma-u.5 for 100808239 .	gma-u.5 for 100820271 .	mtr-u.5 for 11421964 .	mtr-u.5 for 11443391 .	ath-u.5 for RPT1A .	ath-u.5 for AT1G53780 .	vvi-u.5 for 100233125 .	sly-u.5 for 101268371 .	sly-u.5 for 101262927 .	osa-u.5 for 4330943 .	osa-u.5 for 4340376 .	zma-u.5 for 100274064 .	zma-u.5 for 100272769 .

Ortholog

Ortholog ID: 2772

Species

ath

gma

sly

osa

zma

bra

vvi

ppo

mtr

tae

hvu

ghi

bna

cre

sbi

sot

cit

bdi

nta

Symbol

RPT1A

Function^*

regulatory particle triple-A 1A

26S proteasome regulatory complex ATPase

26S proteasome regulatory subunit 7

26S proteasome regulatory subunit 7 homolog A

26S proteasome regulatory subunit 7A-like

uncharacterized LOC100272769

uncharacterized LOC100274064

26S proteasome regulatory subunit 7 homolog A

26S proteasome regulatory subunit 7

26S proteasome regulatory subunit 7 homolog A

26S proteasome regulatory subunit 7

26S proteasome regulatory subunit 7A

26S proteasome regulatory subunit 7A-like

26S proteasome regulatory subunit 7A

26S proteasome regulatory subunit 7 homolog A

26S proteasome regulatory subunit 7-like

uncharacterized protein

26S protease regulatory subunit 7A

26S protease regulatory subunit 7 homolog A-like

26S protease regulatory subunit 7 homolog A

26S proteasome regulatory subunit 7

26S proteasome regulatory subunit 7A

26S proteasome regulatory subunit 7 homolog A

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03050	Proteasome	18

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03050	Proteasome	14
gma04141	Protein processing in endoplasmic reticulum	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03050	Proteasome	12
gma03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03050	Proteasome	12

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03050	Proteasome	13
sly00010	Glycolysis / Gluconeogenesis	2
sly04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03050	Proteasome	11

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03050	Proteasome	9

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03050	Proteasome	17
zma03420	Nucleotide excision repair	2
zma04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03050	Proteasome	17
zma04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	3
bra04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03050	Proteasome	17

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03050	Proteasome	13
vvi00190	Oxidative phosphorylation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	3
ppo03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03050	Proteasome	6
ppo03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03050	Proteasome	13

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03050	Proteasome	11
mtr03013	Nucleocytoplasmic transport	2
mtr03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03050	Proteasome	18
tae03460	Fanconi anemia pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03050	Proteasome	13
tae03420	Nucleotide excision repair	2
tae04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03050	Proteasome	14

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03050	Proteasome	8
ghi00190	Oxidative phosphorylation	2
ghi04145	Phagosome	2
ghi03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03050	Proteasome	8
ghi00190	Oxidative phosphorylation	2
ghi04145	Phagosome	2
ghi03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03050	Proteasome	12
bna00900	Terpenoid backbone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03050	Proteasome	10

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03050	Proteasome	20

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03050	Proteasome	7
sbi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03050	Proteasome	9
sbi03015	mRNA surveillance pathway	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03050	Proteasome	7
sot04144	Endocytosis	3
sot03250	Viral life cycle - HIV-1	2
sot03272	Virion - Hepatitis viruses	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03050	Proteasome	11
sot04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03050	Proteasome	9
cit04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03050	Proteasome	5
cit04141	Protein processing in endoplasmic reticulum	2
cit00970	Aminoacyl-tRNA biosynthesis	2
cit03040	Spliceosome	2
cit04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03050	Proteasome	10
bdi04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03050	Proteasome	8
nta03040	Spliceosome	4
nta03008	Ribosome biogenesis in eukaryotes	2
nta03083	Polycomb repressive complex	2
nta04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03050	Proteasome	11
nta03008	Ribosome biogenesis in eukaryotes	2
nta03083	Polycomb repressive complex	2
nta04712	Circadian rhythm - plant	2
nta03040	Spliceosome	2

Expression

Expression pattern

Entrez Gene ID^*

841812

841815

100779787

100808239

101262927

101268371

4340376

4330943

100272769

100274064

103848512

103832650

100233125

18094660

18109521

11421964

11443391

123157545

123145806

123401440

123407848

107958339

107913828

106345793

106451013

5718297

8082699

8061827

102603313

102584898

102616620

102618498

100841713

107812149

107807071

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Species	ppo	gma	mtr	ath	vvi	sly	osa	zma	cre	ghi	cit	hvu	bdi	sot	bra	sbi	tae	nta	bna
Paralog	5	3	2	2	1	2	2	2	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 7492270 (ppo-u.5 coexpression data)

Top 50 enrichment test to 7492270 (ppo-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**