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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   7493377   50S ribosomal protein L35, chloroplastic 
 ppo-r.4   7493377   50S ribosomal protein L35, chloroplastic 
 gma-u.5   100306481   uncharacterized LOC100306481 
 gma-u.5   100305559   50S ribosomal protein L35 
 mtr-u.5   11418675   50S ribosomal protein L35, chloroplastic 
 ath-u.5   PRPL35   Ribosomal protein L35 
 vvi-u.5   100257357   large ribosomal subunit protein bL35c 
 vvi-u.5   100252143   50S ribosomal protein L35, chloroplastic-like 
 sly-u.5   101252000   large ribosomal subunit protein bL35c 
 osa-u.5   4341664   large ribosomal subunit protein bL35c 
 zma-u.5   542046   50S ribosomal protein L35, chloroplastic-like 

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Top 50 coexpressed genes to 7493377 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7493377 (ppo-u.5 coexpression data)

CoexMap"7493377"


ppoLOC7493377 | Entrez gene ID : 7493377    
Species ppo gma mtr ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 2 2 1 1 2 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG pop03010 [list] [network] Ribosome (698 genes)
GO BP
GO:0006412 [list] [network] translation  (598 genes)  IEA  
GO CC
GO:0015934 [list] [network] large ribosomal subunit  (216 genes)  IEA  
GO:0005840 [list] [network] ribosome  (453 genes)  IEA  
GO MF
GO:0003735 [list] [network] structural constituent of ribosome  (439 genes)  IEA  
Protein XP_002324518.3 [sequence] [blastp]
Subcellular
localization
wolf
chlo 8,  mito 2  (predict for XP_002324518.3)
Subcellular
localization
TargetP
chlo 8  (predict for XP_002324518.3)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
7493377

.
ppo-r.4
for
7493377

.
gma-u.5
for
100306481

.
gma-u.5
for
100305559

.
mtr-u.5
for
11418675

.
ath-u.5
for
PRPL35

.
vvi-u.5
for
100257357

.
vvi-u.5
for
100252143

.
sly-u.5
for
101252000

.
osa-u.5
for
4341664

.
zma-u.5
for
542046

.


Ortholog ID: 7512
Species ath gma gma sly osa zma bra bra vvi vvi ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol PRPL35 LOC100306481 LOC100305559 LOC101252000 LOC4341664 LOC542046 LOC103842385 LOC103864519 LOC100257357 LOC100252143 LOC7493377 LOC11418675 LOC123168800 LOC123162008 LOC123412131 LOC107912264 LOC107918063 LOC106446628 LOC125578534 CHLRE_04g217932v5 LOC8069333 LOC102598919 LOC102622751 LOC100839673 LOC142164155 LOC142172862
Function* Ribosomal protein L35 uncharacterized LOC100306481 50S ribosomal protein L35 large ribosomal subunit protein bL35c large ribosomal subunit protein bL35c 50S ribosomal protein L35, chloroplastic-like 50S ribosomal protein L35, chloroplastic 50S ribosomal protein L35, chloroplastic large ribosomal subunit protein bL35c 50S ribosomal protein L35, chloroplastic-like 50S ribosomal protein L35, chloroplastic 50S ribosomal protein L35, chloroplastic 50S ribosomal protein L35, chloroplastic 50S ribosomal protein L35, chloroplastic 50S ribosomal protein L35, chloroplastic 50S ribosomal protein L35, chloroplastic 50S ribosomal protein L35, chloroplastic 50S ribosomal protein L35, chloroplastic 50S ribosomal protein L35, chloroplastic-like uncharacterized protein 50S ribosomal protein L35, chloroplastic 50S ribosomal protein L35, chloroplastic 50S ribosomal protein L35, chloroplastic 50S ribosomal protein L35, chloroplastic large ribosomal subunit protein bL35c-like large ribosomal subunit protein bL35c-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 11
gma00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
gma01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 16
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 17
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 9
ppo01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 18
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 7
bna03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 5
bna00010 Glycolysis / Gluconeogenesis 4
bna00710 Carbon fixation by Calvin cycle 4
bna01200 Carbon metabolism 4
bna01230 Biosynthesis of amino acids 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03010 Ribosome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 10
sot00460 Cyanoamino acid metabolism 2
sot00500 Starch and sucrose metabolism 2
sot00999 Biosynthesis of various plant secondary metabolites 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 18
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 6
nta00620 Pyruvate metabolism 2
nta00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 6
nta00480 Glutathione metabolism 2
nta00195 Photosynthesis 2
nta00860 Porphyrin metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 816943 100306481 100305559 101252000 4341664 542046 103842385 103864519 100257357 100252143 7493377 11418675 123168800 123162008 123412131 107912264 107918063 106446628 125578534 5726808 8069333 102598919 102622751 100839673 142164155 142172862
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