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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   7495201   SWR1-complex protein 4 
 ppo-r.4   7495201   SWR1-complex protein 4 
 ppo-m.4   7495201   SWR1-complex protein 4 
 gma-u.5   100818926   SWR1-complex protein 4 
 gma-u.5   100808220   SWR1-complex protein 4 
 mtr-u.5   11442051   SWR1-complex protein 4 
 mtr-u.5   11412938   SWR1-complex protein 4 
 ath-u.5   AT2G47210   myb-like transcription factor family protein 
 vvi-u.5   100265771   SWR1-complex protein 4 
 sly-u.5   101262045   SWR1-complex protein 4 
 osa-u.5   4339468   SWR1-complex protein 4 
 zma-u.5   100284452   DNA methyltransferase 1-associated protein 1 

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Top 50 coexpressed genes to 7495201 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7495201 (ppo-u.5 coexpression data)

CoexMap"7495201"


ppoLOC7495201 | Entrez gene ID : 7495201    
Species ppo gma mtr ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 3 2 2 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG pop03082 [list] [network] ATP-dependent chromatin remodeling (85 genes)
GO BP
GO:0000122 [list] [network] negative regulation of transcription by RNA polymerase II  (24 genes)  IEA  
GO:0006338 [list] [network] chromatin remodeling  (144 genes)  IEA  
GO:0006281 [list] [network] DNA repair  (290 genes)  IEA  
GO CC
GO:0000812 [list] [network] Swr1 complex  (10 genes)  IEA  
GO:0035267 [list] [network] NuA4 histone acetyltransferase complex  (14 genes)  IEA  
GO:0005634 [list] [network] nucleus  (3662 genes)  IEA  
GO MF
GO:0003714 [list] [network] transcription corepressor activity  (36 genes)  IEA  
Protein XP_024441330.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 6,  cyto 1,  chlo 1,  mito 1,  cysk 1,  golg 1,  chlo_mito 1,  cyto_pero 1,  cyto_E.R. 1,  cyto_plas 1  (predict for XP_024441330.1)
Subcellular
localization
TargetP
other 8  (predict for XP_024441330.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
7495201

.
ppo-r.4
for
7495201

.
ppo-m.4
for
7495201

.
gma-u.5
for
100818926

.
gma-u.5
for
100808220

.
mtr-u.5
for
11442051

.
mtr-u.5
for
11412938

.
ath-u.5
for
AT2G47210

.
vvi-u.5
for
100265771

.
sly-u.5
for
101262045

.
osa-u.5
for
4339468

.
zma-u.5
for
100284452

.


Ortholog ID: 7972
Species ath gma gma sly osa zma bra bra vvi ppo mtr mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol AT2G47210 LOC100808220 LOC100818926 LOC101262045 LOC4339468 LOC100284452 LOC103866395 LOC103843807 LOC100265771 LOC7495201 LOC11442051 LOC11412938 LOC123065133 LOC123142747 LOC123448205 LOC107910678 LOC107926886 LOC106392334 LOC106436389 CHLRE_03g144907v5 LOC8082922 LOC102592914 LOC102615873 LOC100825598 LOC107803162 LOC107817770
Function* myb-like transcription factor family protein SWR1-complex protein 4 SWR1-complex protein 4 SWR1-complex protein 4 SWR1-complex protein 4 DNA methyltransferase 1-associated protein 1 SWR1-complex protein 4 SWR1-complex protein 4 SWR1-complex protein 4 SWR1-complex protein 4 SWR1-complex protein 4 SWR1-complex protein 4 SWR1-complex protein 4 SWR1-complex protein 4 SWR1-complex protein 4 SWR1-complex protein 4 SWR1-complex protein 4 SWR1-complex protein 4 SWR1-complex protein 4 uncharacterized protein SWR1-complex protein 4 SWR1-complex protein 4 SWR1-complex protein 4 SWR1-complex protein 4 SWR1-complex protein 4 SWR1-complex protein 4
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03050 Proteasome 3
ath04144 Endocytosis 2
ath00020 Citrate cycle (TCA cycle) 2
ath01200 Carbon metabolism 2
ath01210 2-Oxocarboxylic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04141 Protein processing in endoplasmic reticulum 2
gma04144 Endocytosis 2
gma03040 Spliceosome 2
gma03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 4
sly03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 5
osa03082 ATP-dependent chromatin remodeling 3
osa03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03022 Basal transcription factors 2
bra03250 Viral life cycle - HIV-1 2
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03015 mRNA surveillance pathway 2
bra00062 Fatty acid elongation 2
bra01040 Biosynthesis of unsaturated fatty acids 2
bra01212 Fatty acid metabolism 2
bra04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 4
vvi03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03050 Proteasome 6
mtr00190 Oxidative phosphorylation 2
mtr04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03082 ATP-dependent chromatin remodeling 4
tae03013 Nucleocytoplasmic transport 2
tae03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03082 ATP-dependent chromatin remodeling 6
tae03040 Spliceosome 4
tae03013 Nucleocytoplasmic transport 2
tae03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03082 ATP-dependent chromatin remodeling 12
ghi03083 Polycomb repressive complex 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03082 ATP-dependent chromatin remodeling 8
ghi03083 Polycomb repressive complex 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04144 Endocytosis 7
bna03082 ATP-dependent chromatin remodeling 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04144 Endocytosis 4
bna03082 ATP-dependent chromatin remodeling 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 2
cre03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03082 ATP-dependent chromatin remodeling 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03082 ATP-dependent chromatin remodeling 4
nta03022 Basal transcription factors 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 819334 100808220 100818926 101262045 4339468 100284452 103866395 103843807 100265771 7495201 11442051 11412938 123065133 123142747 123448205 107910678 107926886 106392334 106436389 5721284 8082922 102592914 102615873 100825598 107803162 107817770
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