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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   7497597   UBP1-associated proteins 1C 
 ppo-r.4   7497597   UBP1-associated proteins 1C 
 ppo-m.4   7497597   UBP1-associated proteins 1C 
 gma-u.5   100790703   LYAR-type C2HC zinc finger protein 
 gma-u.5   100790272   UBP1-associated proteins 1C 
 mtr-u.5   25494199   UBP1-associated proteins 1C 
 ath-u.5   AT2G19385   zinc ion binding protein 
 vvi-u.5   100252615   UBP1-associated proteins 1C 
 sly-u.5   101260741   UBP1-associated proteins 1C 
 osa-u.5   4324202   UBP1-associated proteins 1C 
 zma-u.5   100194397   RNA-binding protein 

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Top 50 coexpressed genes to 7497597 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7497597 (ppo-u.5 coexpression data)

CoexMap"7497597"


ppoLOC7497597 | Entrez gene ID : 7497597    
Species ppo gma mtr ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 3 2 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0000122 [list] [network] negative regulation of transcription by RNA polymerase II  (24 genes)  IEA  
GO:0006364 [list] [network] rRNA processing  (232 genes)  IEA  
GO CC
GO:0005730 [list] [network] nucleolus  (220 genes)  IEA  
GO MF
GO:0008270 [list] [network] zinc ion binding  (777 genes)  IEA  
GO:0003677 [list] [network] DNA binding  (2205 genes)  IEA  
Protein XP_002308274.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9,  mito 1  (predict for XP_002308274.1)
Subcellular
localization
TargetP
other 8  (predict for XP_002308274.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
7497597

.
ppo-r.4
for
7497597

.
ppo-m.4
for
7497597

.
gma-u.5
for
100790703

.
gma-u.5
for
100790272

.
mtr-u.5
for
25494199

.
ath-u.5
for
AT2G19385

.
vvi-u.5
for
100252615

.
sly-u.5
for
101260741

.
osa-u.5
for
4324202

.
zma-u.5
for
100194397

.


Ortholog ID: 9388
Species ath gma gma sly osa zma bra vvi ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol AT2G19385 LOC100790272 LOC100790703 LOC101260741 LOC4324202 LOC100194397 LOC103828305 LOC100252615 LOC7497597 LOC25494199 LOC123070001 LOC123078459 LOC123443760 LOC107929868 LOC107932258 LOC106357609 LOC125590711 CHLRE_17g701050v5 LOC8078644 LOC102594512 LOC102627652 LOC100824078 LOC107771467 LOC107762905
Function* zinc ion binding protein UBP1-associated proteins 1C LYAR-type C2HC zinc finger protein UBP1-associated proteins 1C UBP1-associated proteins 1C RNA-binding protein UBP1-associated proteins 1C UBP1-associated proteins 1C UBP1-associated proteins 1C UBP1-associated proteins 1C UBP1-associated proteins 1C UBP1-associated proteins 1C UBP1-associated proteins 1C UBP1-associated proteins 1C UBP1-associated proteins 1C UBP1-associated proteins 1C UBP1-associated proteins 1C-like uncharacterized protein UBP1-associated proteins 1C UBP1-associated proteins 1C UBP1-associated proteins 1C UBP1-associated proteins 1C uncharacterized LOC107771467 uncharacterized LOC107762905
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03018 RNA degradation 3
gma03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 17
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 2
bra03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03018 RNA degradation 2
vvi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 4
mtr03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 3
tae03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03008 Ribosome biogenesis in eukaryotes 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 816457 100790272 100790703 101260741 4324202 100194397 103828305 100252615 7497597 25494199 123070001 123078459 123443760 107929868 107932258 106357609 125590711 5717301 8078644 102594512 102627652 100824078 107771467 107762905
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