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Orthologous genes in OrthoFinder**

Species Gene Description
 sly-u.5   CIP5   CONSTANS interacting protein 5 
 sly-r.6   CIP5   CONSTANS interacting protein 5 
 ath-u.5   PDE312   Nucleic acid-binding, OB-fold-like protein 
 gma-u.5   100783002   protein PLASTID TRANSCRIPTIONALLY ACTIVE 10 
 gma-u.5   100775818   protein PLASTID TRANSCRIPTIONALLY ACTIVE 10 
 vvi-u.5   100264639   protein PLASTID TRANSCRIPTIONALLY ACTIVE 10 
 ppo-u.5   7463104   protein PLASTID TRANSCRIPTIONALLY ACTIVE 10 
 mtr-u.5   25489495   protein PLASTID TRANSCRIPTIONALLY ACTIVE 10 
 osa-u.5   4325010   protein PLASTID TRANSCRIPTIONALLY ACTIVE 10 
 zma-u.5   100382312   Protein PLASTID TRANSCRIPTIONALLY ACTIVE 10 

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Top 50 coexpressed genes to CIP5 (sly-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CIP5 (sly-u.5 coexpression data)

CoexMap"778252"


slyCIP5 | Entrez gene ID : 778252      
Species sly ath gma vvi ppo mtr osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 2 1 2 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0000427 [list] [network] plastid-encoded plastid RNA polymerase complex  (4 genes)  IEA  
GO:0009507 [list] [network] chloroplast  (632 genes)  IEA  
GO MF
GO:0003723 [list] [network] RNA binding  (1208 genes)  IEA  
Protein NP_001334062.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 5,  nucl 3,  cyto 1,  pero 1,  cyto_pero 1,  mito_plas 1  (predict for NP_001334062.1)
Subcellular
localization
TargetP
chlo 5  (predict for NP_001334062.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sly-u.5
for
CIP5

.
sly-r.6
for
CIP5

.
ath-u.5
for
PDE312

.
gma-u.5
for
100783002

.
gma-u.5
for
100775818

.
vvi-u.5
for
100264639

.
ppo-u.5
for
7463104

.
mtr-u.5
for
25489495

.
osa-u.5
for
4325010

.
zma-u.5
for
100382312

.


Ortholog ID: 9525
Species ath gma sly osa zma bra vvi ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol PDE312 LOC100775818 CIP5 LOC4325010 LOC100382312 LOC103874673 LOC100264639 LOC7463104 LOC25489495 LOC123067688 LOC123080016 LOC123442022 LOC121219329 LOC121232058 LOC106376558 LOC106415569 CHLRE_07g348500v5 LOC8056124 LOC102591466 LOC102625535 LOC100821290 LOC107787150 LOC107780559
Function* Nucleic acid-binding, OB-fold-like protein protein PLASTID TRANSCRIPTIONALLY ACTIVE 10 CONSTANS interacting protein 5 protein PLASTID TRANSCRIPTIONALLY ACTIVE 10 Protein PLASTID TRANSCRIPTIONALLY ACTIVE 10 protein PLASTID TRANSCRIPTIONALLY ACTIVE 10 protein PLASTID TRANSCRIPTIONALLY ACTIVE 10 protein PLASTID TRANSCRIPTIONALLY ACTIVE 10 protein PLASTID TRANSCRIPTIONALLY ACTIVE 10 protein PLASTID TRANSCRIPTIONALLY ACTIVE 10 protein PLASTID TRANSCRIPTIONALLY ACTIVE 10 protein PLASTID TRANSCRIPTIONALLY ACTIVE 10 protein PLASTID TRANSCRIPTIONALLY ACTIVE 10 protein PLASTID TRANSCRIPTIONALLY ACTIVE 10 protein PLASTID TRANSCRIPTIONALLY ACTIVE 10 protein PLASTID TRANSCRIPTIONALLY ACTIVE 10 uncharacterized protein protein PLASTID TRANSCRIPTIONALLY ACTIVE 10 protein PLASTID TRANSCRIPTIONALLY ACTIVE 10 protein PLASTID TRANSCRIPTIONALLY ACTIVE 10 protein PLASTID TRANSCRIPTIONALLY ACTIVE 10 protein PLASTID TRANSCRIPTIONALLY ACTIVE 10-like protein PLASTID TRANSCRIPTIONALLY ACTIVE 10
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00220 Arginine biosynthesis 2
gma00330 Arginine and proline metabolism 2
gma04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00220 Arginine biosynthesis 2
bna00330 Arginine and proline metabolism 2
bna04626 Plant-pathogen interaction 2
bna00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00220 Arginine biosynthesis 2
bna00330 Arginine and proline metabolism 2
bna04626 Plant-pathogen interaction 2
bna00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00240 Pyrimidine metabolism 2
cre01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03018 RNA degradation 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 824009 100775818 778252 4325010 100382312 103874673 100264639 7463104 25489495 123067688 123080016 123442022 121219329 121232058 106376558 106415569 5718158 8056124 102591466 102625535 100821290 107787150 107780559
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