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Orthologous genes in OrthoFinder**

Species Gene Description
 sly-u.5   778316   U1 small nuclear ribonucleoprotein C-like 
 sly-r.6   778316   U1 small nuclear ribonucleoprotein C-like 
 sly-m.5   778316   U1 small nuclear ribonucleoprotein C-like 
 sly-u.5   101263748   U1 small nuclear ribonucleoprotein C-like 
 ath-u.5   AT4G03120   C2H2 and C2HC zinc fingers superfamily protein 
 gma-u.5   100795821   U1 small nuclear ribonucleoprotein C 
 gma-u.5   100790892   U1 small nuclear ribonucleoprotein C 
 vvi-u.5   100263028   U1 small nuclear ribonucleoprotein C-like 
 ppo-u.5   7475730   U1 small nuclear ribonucleoprotein C 
 mtr-u.5   25484788   U1 small nuclear ribonucleoprotein C 
 mtr-u.5   25499578   U1 small nuclear ribonucleoprotein C 
 osa-u.5   4328958   U1 small nuclear ribonucleoprotein C-1 
 zma-u.5   100192596   uncharacterized LOC100192596 

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Top 50 coexpressed genes to 778316 (sly-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 778316 (sly-u.5 coexpression data)

CoexMap"778316"


slyLOC778316 | Entrez gene ID : 778316      
Species sly ath gma vvi ppo mtr osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 4 1 2 1 1 2 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG sly03040 [list] [network] Spliceosome (385 genes)
GO BP
GO:0000395 [list] [network] mRNA 5'-splice site recognition  (5 genes)  IEA  
GO:0000387 [list] [network] spliceosomal snRNP assembly  (24 genes)  IEA  
GO:0000398 [list] [network] mRNA splicing, via spliceosome  (162 genes)  IEA  
GO CC
GO:0005685 [list] [network] U1 snRNP  (23 genes)  IEA  
GO:0005634 [list] [network] nucleus  (2947 genes)  IEA  
GO MF
GO:0030627 [list] [network] pre-mRNA 5'-splice site binding  (4 genes)  IEA  
GO:0008270 [list] [network] zinc ion binding  (1242 genes)  IEA  
Protein NP_001234106.1 [sequence] [blastp]
XP_010321699.1 [sequence] [blastp]
XP_025887102.1 [sequence] [blastp]
XP_069154836.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 7,  cyto 1,  chlo 1,  plas 1,  cyto_pero 1,  cyto_E.R. 1  (predict for NP_001234106.1)
nucl 7,  cyto 1,  chlo 1,  plas 1,  cyto_pero 1,  cyto_E.R. 1  (predict for XP_010321699.1)
nucl 7,  cyto 1,  chlo 1,  plas 1,  cyto_pero 1,  cyto_E.R. 1  (predict for XP_025887102.1)
nucl 7,  cyto 1,  chlo 1,  plas 1,  cyto_pero 1,  cyto_E.R. 1  (predict for XP_069154836.1)
Subcellular
localization
TargetP
other 8  (predict for NP_001234106.1)
other 8  (predict for XP_010321699.1)
other 8  (predict for XP_025887102.1)
other 8  (predict for XP_069154836.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sly-u.5
for
778316

.
sly-r.6
for
778316

.
sly-m.5
for
778316

.
sly-u.5
for
101263748

.
ath-u.5
for
AT4G03120

.
gma-u.5
for
100795821

.
gma-u.5
for
100790892

.
vvi-u.5
for
100263028

.
ppo-u.5
for
7475730

.
mtr-u.5
for
25484788

.
mtr-u.5
for
25499578

.
osa-u.5
for
4328958

.
zma-u.5
for
100192596

.


Ortholog ID: 5348
Species ath gma gma sly sly osa zma bra bra vvi ppo mtr mtr tae tae hvu ghi ghi bna bna cre sbi sbi sot sot cit bdi nta nta
Symbol AT4G03120 LOC100790892 LOC100795821 LOC778316 LOC101263748 LOC4328958 LOC100192596 LOC103858717 LOC103868273 LOC100263028 LOC7475730 LOC25499578 LOC25484788 LOC123144527 LOC123127464 LOC123401927 LOC107949854 LOC107953202 LOC106404864 LOC106431495 CHLRE_09g401300v5 LOC8078373 LOC8068597 LOC102580993 LOC102605266 LOC102624033 LOC100822246 LOC142179358 LOC107794241
Function* C2H2 and C2HC zinc fingers superfamily protein U1 small nuclear ribonucleoprotein C U1 small nuclear ribonucleoprotein C U1 small nuclear ribonucleoprotein C-like U1 small nuclear ribonucleoprotein C-like U1 small nuclear ribonucleoprotein C-1 uncharacterized LOC100192596 U1 small nuclear ribonucleoprotein C U1 small nuclear ribonucleoprotein C-like U1 small nuclear ribonucleoprotein C-like U1 small nuclear ribonucleoprotein C U1 small nuclear ribonucleoprotein C U1 small nuclear ribonucleoprotein C U1 small nuclear ribonucleoprotein C-1 U1 small nuclear ribonucleoprotein C-1 U1 small nuclear ribonucleoprotein C-1-like U1 small nuclear ribonucleoprotein C U1 small nuclear ribonucleoprotein C U1 small nuclear ribonucleoprotein C-like U1 small nuclear ribonucleoprotein C-like uncharacterized protein U1 small nuclear ribonucleoprotein C-1 U1 small nuclear ribonucleoprotein C-2 U1 small nuclear ribonucleoprotein C-like U1 small nuclear ribonucleoprotein C-like U1 small nuclear ribonucleoprotein C U1 small nuclear ribonucleoprotein C-1 U1 small nuclear ribonucleoprotein C-like U1 small nuclear ribonucleoprotein C
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 8
ath03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 4
gma03010 Ribosome 3
gma03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 8
gma03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03050 Proteasome 4
sly03040 Spliceosome 3
sly03013 Nucleocytoplasmic transport 2
sly03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 5
osa03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 6
zma03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 3
vvi03010 Ribosome 2
vvi00020 Citrate cycle (TCA cycle) 2
vvi01200 Carbon metabolism 2
vvi00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 3
ppo03013 Nucleocytoplasmic transport 2
ppo03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 11
mtr03040 Spliceosome 4
mtr03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03050 Proteasome 6
tae03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03050 Proteasome 4
tae03040 Spliceosome 3
tae03060 Protein export 2
tae04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 4
hvu03015 mRNA surveillance pathway 2
hvu04120 Ubiquitin mediated proteolysis 2
hvu04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04136 Autophagy - other 2
ghi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04136 Autophagy - other 2
ghi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00190 Oxidative phosphorylation 9
cre04145 Phagosome 9
cre03040 Spliceosome 3
cre04142 Lysosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 8
sbi03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 5
sbi03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 3
sot04120 Ubiquitin mediated proteolysis 2
sot03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03050 Proteasome 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00071 Fatty acid degradation 2
nta04120 Ubiquitin mediated proteolysis 2
nta03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 828071 100790892 100795821 778316 101263748 4328958 100192596 103858717 103868273 100263028 7475730 25499578 25484788 123144527 123127464 123401927 107949854 107953202 106404864 106431495 5720710 8078373 8068597 102580993 102605266 102624033 100822246 142179358 107794241
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