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Orthologous genes in OrthoFinder**

Species Gene Description
 sly-u.5   778342   pentatricopeptide repeat-containing protein 
 sly-r.6   778342   pentatricopeptide repeat-containing protein 
 ath-u.5   AT1G15480   Tetratricopeptide repeat (TPR)-like superfamily protein 
 ath-u.5   PPR596   PENTATRICOPEPTIDE REPEAT 596 
 gma-u.5   100806780   pentatricopeptide repeat-containing protein At1g80270, mitochondrial 
 gma-u.5   100805354   pentatricopeptide repeat-containing protein At1g80270, mitochondrial 
 gma-u.5   100500196   pentatricopeptide repeat-containing protein 
 vvi-u.5   100252030   pentatricopeptide repeat-containing protein At1g80270, mitochondrial 
 ppo-u.5   7479672   pentatricopeptide repeat-containing protein At1g80270, mitochondrial 
 ppo-u.5   7464096   pentatricopeptide repeat-containing protein At1g80270, mitochondrial 
 ppo-u.5   7460260   pentatricopeptide repeat-containing protein At1g80270, mitochondrial 
 mtr-u.5   11416123   pentatricopeptide repeat-containing protein At1g80270, mitochondrial 
 mtr-u.5   11429425   pentatricopeptide repeat-containing protein At1g80270, mitochondrial 
 osa-u.5   4326909   pentatricopeptide repeat-containing protein At1g80270, mitochondrial 
 osa-u.5   4351621   pentatricopeptide repeat-containing protein At1g80270, mitochondrial 
 zma-u.5   103650031   pentatricopeptide repeat-containing protein At1g80270, mitochondrial 
 zma-u.5   100281211   DNA-binding protein 

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Top 50 coexpressed genes to 778342 (sly-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 778342 (sly-u.5 coexpression data)

CoexMap"778342"


slyLOC778342 | Entrez gene ID : 778342      
Species sly ath gma vvi ppo mtr osa zma cre ghi cit hvu bdi sot bra sbi tae nta bna
Paralog 2 2 3 1 3 2 2 2 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0005739 [list] [network] mitochondrion  (608 genes)  IEA  
GO MF
GO:0005515 [list] [network] protein binding  (3982 genes)  IEA  
Protein NP_001333831.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 5,  mito 4,  cyto_mito 2  (predict for NP_001333831.1)
Subcellular
localization
TargetP
mito 4  (predict for NP_001333831.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sly-u.5
for
778342

.
sly-r.6
for
778342

.
ath-u.5
for
AT1G15480

.
ath-u.5
for
PPR596

.
gma-u.5
for
100806780

.
gma-u.5
for
100805354

.
gma-u.5
for
100500196

.
vvi-u.5
for
100252030

.
ppo-u.5
for
7479672

.
ppo-u.5
for
7464096

.
ppo-u.5
for
7460260

.
mtr-u.5
for
11416123

.
mtr-u.5
for
11429425

.
osa-u.5
for
4326909

.
osa-u.5
for
4351621

.
zma-u.5
for
103650031

.
zma-u.5
for
100281211

.


Ortholog ID: 6128
Species ath ath gma gma sly osa osa zma zma bra bra vvi ppo ppo mtr mtr tae tae hvu ghi ghi bna bna sbi sot sot cit bdi nta nta
Symbol PPR596 AT1G15480 LOC100806780 LOC100500196 LOC778342 LOC4351621 LOC4326909 LOC100281211 LOC103650031 LOC103872343 LOC103830428 LOC100252030 LOC7479672 LOC7464096 LOC11429425 LOC11416123 LOC123069719 LOC123078206 LOC123443558 LOC107922216 LOC107921976 LOC106452365 LOC106346654 LOC110433902 LOC102589958 LOC102598161 LOC102614459 LOC100825102 LOC107803918 LOC107803239
Function* PENTATRICOPEPTIDE REPEAT 596 Tetratricopeptide repeat (TPR)-like superfamily protein pentatricopeptide repeat-containing protein At1g80270, mitochondrial pentatricopeptide repeat-containing protein pentatricopeptide repeat-containing protein pentatricopeptide repeat-containing protein At1g80270, mitochondrial pentatricopeptide repeat-containing protein At1g80270, mitochondrial DNA-binding protein pentatricopeptide repeat-containing protein At1g80270, mitochondrial pentatricopeptide repeat-containing protein At1g15480, mitochondrial pentatricopeptide repeat-containing protein At1g80270, mitochondrial pentatricopeptide repeat-containing protein At1g80270, mitochondrial pentatricopeptide repeat-containing protein At1g80270, mitochondrial pentatricopeptide repeat-containing protein At1g80270, mitochondrial pentatricopeptide repeat-containing protein At1g80270, mitochondrial pentatricopeptide repeat-containing protein At1g80270, mitochondrial pentatricopeptide repeat-containing protein At1g80270, mitochondrial pentatricopeptide repeat-containing protein At1g80270, mitochondrial pentatricopeptide repeat-containing protein At1g80270, mitochondrial-like pentatricopeptide repeat-containing protein At1g80270, mitochondrial pentatricopeptide repeat-containing protein At1g80270, mitochondrial pentatricopeptide repeat-containing protein At1g15480, mitochondrial pentatricopeptide repeat-containing protein At1g15480, mitochondrial pentatricopeptide repeat-containing protein At1g80270, mitochondrial-like pentatricopeptide repeat-containing protein At1g80270, mitochondrial-like pentatricopeptide repeat-containing protein At1g80270, mitochondrial pentatricopeptide repeat-containing protein At1g80270, mitochondrial pentatricopeptide repeat-containing protein At1g80270, mitochondrial pentatricopeptide repeat-containing protein At1g80270, mitochondrial-like pentatricopeptide repeat-containing protein At1g80270, mitochondrial-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 2
ath03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 6
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 6
zma03013 Nucleocytoplasmic transport 2
zma00230 Purine metabolism 2
zma00250 Alanine, aspartate and glutamate metabolism 2
zma01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03013 Nucleocytoplasmic transport 4
zma03430 Mismatch repair 3
zma03008 Ribosome biogenesis in eukaryotes 2
zma03030 DNA replication 2
zma03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 4
bra00230 Purine metabolism 2
bra01232 Nucleotide metabolism 2
bra03040 Spliceosome 2
bra01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 3
ppo01210 2-Oxocarboxylic acid metabolism 2
ppo01230 Biosynthesis of amino acids 2
ppo00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03018 RNA degradation 3
mtr04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 2
mtr03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 3
tae03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00190 Oxidative phosphorylation 3
tae00860 Porphyrin metabolism 3
tae01240 Biosynthesis of cofactors 3
tae03013 Nucleocytoplasmic transport 3
tae03020 RNA polymerase 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 4
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 4
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03013 Nucleocytoplasmic transport 2
sbi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 6
sot03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 2
nta03020 RNA polymerase 2
nta00040 Pentose and glucuronate interconversions 2
nta00052 Galactose metabolism 2
nta00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 2
nta03020 RNA polymerase 2
nta03082 ATP-dependent chromatin remodeling 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 844367 838118 100806780 100500196 778342 4351621 4326909 100281211 103650031 103872343 103830428 100252030 7479672 7464096 11429425 11416123 123069719 123078206 123443558 107922216 107921976 106452365 106346654 110433902 102589958 102598161 102614459 100825102 107803918 107803239
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