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Orthologous genes in OrthoFinder**

Species Gene Description
 sly-u.5   TH3   tobamovirus multiplication 1 homolog 3 
 sly-r.6   TH3   tobamovirus multiplication 1 homolog 3 
 sly-u.5   TH2   tobamovirus multiplication 1 homolog 2 
 ath-u.5   TOM1   tobamovirus multiplication 1 
 gma-u.5   100777331   tobamovirus multiplication protein 1 
 gma-u.5   100802255   tobamovirus multiplication protein 1 
 gma-u.5   100814212   uncharacterized LOC100814212 
 vvi-u.5   109121382   tobamovirus multiplication protein 1 
 ppo-u.5   18111276   tobamovirus multiplication protein 1 
 ppo-u.5   7479067   tobamovirus multiplication protein 1 
 mtr-u.5   11442697   tobamovirus multiplication protein 1 
 mtr-u.5   25486132   tobamovirus multiplication protein 1 
 osa-u.5   9271241   tobamovirus multiplication protein 1 
 osa-u.5   4342176   tobamovirus multiplication protein 1 
 zma-u.5   100279488   Tobamovirus multiplication protein 1 
 zma-u.5   100283022   uncharacterized LOC100283022 

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Top 50 coexpressed genes to TH3 (sly-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to TH3 (sly-u.5 coexpression data)

CoexMap"778361"


slyTH3 | Entrez gene ID : 778361      
Species sly ath gma vvi ppo mtr osa zma cre ghi cit hvu bdi sot bra sbi tae nta bna
Paralog 3 1 3 1 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0009705 [list] [network] plant-type vacuole membrane  (49 genes)  IEA  
GO MF
Protein NP_001234306.1 [sequence] [blastp]
XP_010315885.1 [sequence] [blastp]
Subcellular
localization
wolf
plas 4,  cyto 2,  E.R._plas 2,  mito_plas 2  (predict for NP_001234306.1)
plas 4,  cyto 2,  E.R._plas 2,  mito_plas 2  (predict for XP_010315885.1)
Subcellular
localization
TargetP
other 9  (predict for NP_001234306.1)
other 9  (predict for XP_010315885.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sly-u.5
for
TH3

.
sly-r.6
for
TH3

.
sly-u.5
for
TH2

.
ath-u.5
for
TOM1

.
gma-u.5
for
100777331

.
gma-u.5
for
100802255

.
gma-u.5
for
100814212

.
vvi-u.5
for
109121382

.
ppo-u.5
for
18111276

.
ppo-u.5
for
7479067

.
mtr-u.5
for
11442697

.
mtr-u.5
for
25486132

.
osa-u.5
for
9271241

.
osa-u.5
for
4342176

.
zma-u.5
for
100279488

.
zma-u.5
for
100283022

.


Ortholog ID: 3484
Species ath gma gma sly sly osa osa zma zma vvi ppo ppo mtr tae tae hvu bna bna cre sbi sbi sot sot cit bdi nta nta
Symbol TOM1 LOC100777331 LOC100814973 TH2 TH3 LOC4342176 LOC9271241 LOC100283022 LOC100279488 LOC109121382 LOC7479067 LOC18111276 LOC11442697 LOC123045155 LOC123188795 LOC123426382 LOC106421007 LOC125590056 CHLRE_12g487250v5 LOC8065662 LOC8054494 LOC102583873 LOC102591119 LOC102611625 LOC100826269 LOC107776768 LOC107827226
Function* tobamovirus multiplication 1 tobamovirus multiplication protein 1 tobamovirus multiplication protein 1 tobamovirus multiplication 1 homolog 2 tobamovirus multiplication 1 homolog 3 tobamovirus multiplication protein 1 tobamovirus multiplication protein 1 uncharacterized LOC100283022 Tobamovirus multiplication protein 1 tobamovirus multiplication protein 1 tobamovirus multiplication protein 1 tobamovirus multiplication protein 1 tobamovirus multiplication protein 1 tobamovirus multiplication protein 1 tobamovirus multiplication protein 1 tobamovirus multiplication protein 1 tobamovirus multiplication protein 1 tobamovirus multiplication protein 1 uncharacterized protein tobamovirus multiplication protein 1 tobamovirus multiplication protein 1 tobamovirus multiplication protein 1-like tobamovirus multiplication protein 1 tobamovirus multiplication protein 1 tobamovirus multiplication protein 1 tobamovirus multiplication protein 1-like tobamovirus multiplication protein 1-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00190 Oxidative phosphorylation 4
ath04145 Phagosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04141 Protein processing in endoplasmic reticulum 8
sly03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04120 Ubiquitin mediated proteolysis 3
sly03013 Nucleocytoplasmic transport 2
sly03083 Polycomb repressive complex 2
sly04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00052 Galactose metabolism 5
zma00500 Starch and sucrose metabolism 5
zma00520 Amino sugar and nucleotide sugar metabolism 5
zma01250 Biosynthesis of nucleotide sugars 5
zma00010 Glycolysis / Gluconeogenesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00564 Glycerophospholipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00061 Fatty acid biosynthesis 4
mtr01212 Fatty acid metabolism 4
mtr01240 Biosynthesis of cofactors 3
mtr03050 Proteasome 3
mtr00620 Pyruvate metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre01200 Carbon metabolism 3
cre04148 Efferocytosis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00190 Oxidative phosphorylation 3
sbi04142 Lysosome 2
sbi04145 Phagosome 2
sbi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 2
sbi04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04144 Endocytosis 2
sot04016 MAPK signaling pathway - plant 2
sot04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00190 Oxidative phosphorylation 4
sot00270 Cysteine and methionine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00564 Glycerophospholipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03420 Nucleotide excision repair 2
nta04141 Protein processing in endoplasmic reticulum 2
nta00330 Arginine and proline metabolism 2
nta00190 Oxidative phosphorylation 2
nta04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00510 N-Glycan biosynthesis 2
nta00513 Various types of N-glycan biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 828267 100777331 100814973 778314 778361 4342176 9271241 100283022 100279488 109121382 7479067 18111276 11442697 123045155 123188795 123426382 106421007 125590056 5716641 8065662 8054494 102583873 102591119 102611625 100826269 107776768 107827226
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