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Orthologous genes in OrthoFinder**

Species Gene Description
 sly-u.5   ARF3   auxin response factor 3 
 sly-r.6   ARF3   auxin response factor 3 
 sly-m.5   ARF3   auxin response factor 3 
 ath-u.5   ETT   Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-like protein 
 gma-u.5   100810458   auxin response factor 3 
 gma-u.5   100789906   auxin response factor 3 
 gma-u.5   100796970   auxin response factor 3 
 vvi-u.5   100245251   auxin response factor 3 
 ppo-u.5   18103082   auxin response factor 3 
 ppo-u.5   7470245   auxin response factor 3 
 mtr-u.5   25493074   auxin response factor 3 
 mtr-u.5   11437792   auxin response factor 3 
 osa-u.5   4325895   auxin response factor 2-like 
 osa-u.5   9268260   auxin response factor 15-like 
 zma-u.5   103630727   auxin response factor 15 
 zma-u.5   100384045   uncharacterized LOC100384045 

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Top 50 coexpressed genes to ARF3 (sly-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to ARF3 (sly-u.5 coexpression data)

CoexMap"778363"


slyARF3 | Entrez gene ID : 778363      
Species sly ath gma vvi ppo mtr osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 3 1 3 1 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG sly04075 [list] [network] Plant hormone signal transduction (437 genes)
GO BP
GO:0009725 [list] [network] response to hormone  (341 genes)  IEA  
GO:0006355 [list] [network] regulation of DNA-templated transcription  (1608 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (2947 genes)  IEA  
GO MF
GO:0003677 [list] [network] DNA binding  (1883 genes)  IEA  
Protein NP_001234316.1 [sequence] [blastp]
XP_010315887.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 10  (predict for NP_001234316.1)
nucl 10  (predict for XP_010315887.1)
Subcellular
localization
TargetP
other 8  (predict for NP_001234316.1)
other 8  (predict for XP_010315887.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sly-u.5
for
ARF3

.
sly-r.6
for
ARF3

.
sly-m.5
for
ARF3

.
ath-u.5
for
ETT

.
gma-u.5
for
100810458

.
gma-u.5
for
100789906

.
gma-u.5
for
100796970

.
vvi-u.5
for
100245251

.
ppo-u.5
for
18103082

.
ppo-u.5
for
7470245

.
mtr-u.5
for
25493074

.
mtr-u.5
for
11437792

.
osa-u.5
for
4325895

.
osa-u.5
for
9268260

.
zma-u.5
for
103630727

.
zma-u.5
for
100384045

.


Ortholog ID: 4694
Species ath gma gma sly osa osa zma zma bra vvi ppo ppo mtr mtr tae tae hvu ghi ghi bna bna sbi sbi sot cit bdi bdi nta nta
Symbol ETT LOC100796970 LOC100789906 ARF3 LOC4325895 LOC9268260 LOC100384045 LOC103630727 ARF3-2 LOC100245251 LOC18103082 LOC7470245 LOC25493074 LOC11437792 LOC123145822 LOC123070318 LOC123450253 LOC107941725 LOC121203110 LOC106447200 LOC106422928 LOC8074594 LOC8080830 LOC102582172 LOC102630998 LOC100823758 LOC100829904 LOC107803745 LOC107785172
Function* Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-like protein auxin response factor 3 auxin response factor 3 auxin response factor 3 auxin response factor 2-like auxin response factor 15-like uncharacterized LOC100384045 auxin response factor 15 auxin response factor 3 auxin response factor 3 auxin response factor 3 auxin response factor 3 auxin response factor 3 auxin response factor 3 auxin response factor 15 auxin response factor 2 auxin response factor 15-like auxin response factor 3 auxin response factor 3 auxin response factor 3-like auxin response factor 3-like auxin response factor 15 auxin response factor 2 auxin response factor 3-like auxin response factor 3-like auxin response factor 15 auxin response factor 2 auxin response factor 3 auxin response factor 3
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04075 Plant hormone signal transduction 3
ath00270 Cysteine and methionine metabolism 2
ath00920 Sulfur metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04075 Plant hormone signal transduction 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04075 Plant hormone signal transduction 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04075 Plant hormone signal transduction 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04075 Plant hormone signal transduction 4
osa04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04075 Plant hormone signal transduction 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04075 Plant hormone signal transduction 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04075 Plant hormone signal transduction 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04075 Plant hormone signal transduction 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae02010 ABC transporters 5
tae04981 Folate transport and metabolism 5
tae04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04075 Plant hormone signal transduction 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04075 Plant hormone signal transduction 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04075 Plant hormone signal transduction 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 9
sbi03030 DNA replication 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04075 Plant hormone signal transduction 4
cit03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00500 Starch and sucrose metabolism 5
bdi04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04075 Plant hormone signal transduction 3
bdi00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04075 Plant hormone signal transduction 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04075 Plant hormone signal transduction 4
nta00904 Diterpenoid biosynthesis 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 817956 100796970 100789906 778363 4325895 9268260 100384045 103630727 103865306 100245251 18103082 7470245 25493074 11437792 123145822 123070318 123450253 107941725 121203110 106447200 106422928 8074594 8080830 102582172 102630998 100823758 100829904 107803745 107785172
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