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Orthologous genes in OrthoFinder**

Species Gene Description
 sbi-r.1   8055149   60S ribosomal export protein NMD3 
 zma-u.5   100502456   nonsense-mediated mRNA decay NMD3 family protein 
 zma-u.5   100194368   nonsense-mediated mRNA decay NMD3 family protein 
 osa-u.5   4349477   uncharacterized LOC4349477 
 ath-u.5   NMD3   nonsense-mediated mRNA decay NMD3 family protein 
 gma-u.5   100799026   60S ribosomal export protein NMD3 
 gma-u.5   100783829   60S ribosomal export protein NMD3 
 sly-u.5   101253905   uncharacterized LOC101253905 
 vvi-u.5   100245020   uncharacterized LOC100245020 
 vvi-u.5   100241812   uncharacterized LOC100241812 
 ppo-u.5   7472601   uncharacterized LOC7472601 
 mtr-u.5   11406641   60S ribosomal export protein NMD3 

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Top 50 coexpressed genes to 8055149 (sbi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 8055149 (sbi-r.1 coexpression data)

CoexMap"8055149"


sbiLOC8055149 | Entrez gene ID : 8055149      
Species sbi zma osa ath gma sly vvi ppo mtr bra nta cre hvu cit bdi sot tae bna ghi
Paralog 1 2 1 1 2 1 2 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG sbi03008 [list] [network] Ribosome biogenesis in eukaryotes (91 genes)
sbi03013 [list] [network] Nucleocytoplasmic transport (112 genes)
GO BP
GO:0000055 [list] [network] ribosomal large subunit export from nucleus  (11 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (2977 genes)  IEA  
GO:0005737 [list] [network] cytoplasm  (4816 genes)  IEA  
GO MF
GO:0043023 [list] [network] ribosomal large subunit binding  (10 genes)  IEA  
Protein XP_002464890.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  vacu 3,  extr 1,  E.R._vacu 1  (predict for XP_002464890.1)
Subcellular
localization
TargetP
other 2  (predict for XP_002464890.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sbi-r.1
for
8055149

.
zma-u.5
for
100502456

.
zma-u.5
for
100194368

.
osa-u.5
for
4349477

.
ath-u.5
for
NMD3

.
gma-u.5
for
100799026

.
gma-u.5
for
100783829

.
sly-u.5
for
101253905

.
vvi-u.5
for
100245020

.
vvi-u.5
for
100241812

.
ppo-u.5
for
7472601

.
mtr-u.5
for
11406641

.


Ortholog ID: 6480
Species ath gma gma sly osa zma zma bra bra vvi vvi ppo mtr tae tae hvu ghi ghi bna bna cre cre sbi sot cit bdi nta nta
Symbol NMD3 LOC100799026 LOC100783829 LOC101253905 LOC4349477 LOC100194368 LOC100502456 LOC103831080 LOC103849030 LOC100245020 LOC100241812 LOC7472601 LOC11406641 LOC123125780 LOC123181456 LOC123436040 LOC107958610 LOC107892343 LOC106427944 LOC111199292 CHLRE_15g640652v5 CHLRE_15g640250v5 LOC8055149 LOC102587719 LOC102628152 LOC100835245 LOC142161668 LOC107796851
Function* nonsense-mediated mRNA decay NMD3 family protein 60S ribosomal export protein NMD3 60S ribosomal export protein NMD3 uncharacterized LOC101253905 uncharacterized LOC4349477 nonsense-mediated mRNA decay NMD3 family protein nonsense-mediated mRNA decay NMD3 family protein 60S ribosomal export protein NMD3 60S ribosomal export protein NMD3 uncharacterized LOC100245020 uncharacterized LOC100241812 uncharacterized LOC7472601 60S ribosomal export protein NMD3 60S ribosomal export protein NMD3 60S ribosomal export protein NMD3 60S ribosomal export protein NMD3 60S ribosomal export protein NMD3 60S ribosomal export protein NMD3 60S ribosomal export protein NMD3-like 60S ribosomal export protein NMD3-like uncharacterized protein uncharacterized protein 60S ribosomal export protein NMD3 60S ribosomal export protein NMD3-like uncharacterized LOC102628152 60S ribosomal export protein NMD3 uncharacterized LOC142161668 uncharacterized LOC107796851
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 5
ath03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 5
gma03013 Nucleocytoplasmic transport 3
gma03010 Ribosome 2
gma00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 6
gma03013 Nucleocytoplasmic transport 3
gma03008 Ribosome biogenesis in eukaryotes 3
gma00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 2
osa03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 3
zma03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 6
zma03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 3
vvi00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 5
ppo03040 Spliceosome 5
ppo03013 Nucleocytoplasmic transport 4
ppo03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 6
tae03013 Nucleocytoplasmic transport 3
tae00970 Aminoacyl-tRNA biosynthesis 3
tae00450 Selenocompound metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 3
tae03013 Nucleocytoplasmic transport 3
tae00450 Selenocompound metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 5
ghi03013 Nucleocytoplasmic transport 3
ghi00790 Folate biosynthesis 2
ghi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 3
ghi03013 Nucleocytoplasmic transport 3
ghi00790 Folate biosynthesis 2
ghi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 6
bna03013 Nucleocytoplasmic transport 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 6
bna03013 Nucleocytoplasmic transport 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 4
sot03013 Nucleocytoplasmic transport 4
sot03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03013 Nucleocytoplasmic transport 3
cit03010 Ribosome 2
cit03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 3
bdi03013 Nucleocytoplasmic transport 2
bdi00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 2
nta03013 Nucleocytoplasmic transport 2
nta00750 Vitamin B6 metabolism 2
nta01240 Biosynthesis of cofactors 2
nta00910 Nitrogen metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 2
nta03013 Nucleocytoplasmic transport 2
nta00750 Vitamin B6 metabolism 2
nta01240 Biosynthesis of cofactors 2
nta00910 Nitrogen metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 814908 100799026 100783829 101253905 4349477 100194368 100502456 103831080 103849030 100245020 100241812 7472601 11406641 123125780 123181456 123436040 107958610 107892343 106427944 111199292 66056450 5726704 8055149 102587719 102628152 100835245 142161668 107796851
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