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Orthologous genes in OrthoFinder**

Species Gene Description
 sbi-r.1   8058559   ERAD-associated E3 ubiquitin-protein ligase HRD1 
 zma-u.5   100384282   uncharacterized LOC100384282 
 zma-u.5   100217233   ERAD-associated E3 ubiquitin-protein ligase HRD1A 
 osa-u.5   4340826   ERAD-associated E3 ubiquitin-protein ligase HRD1-like 
 ath-u.5   Hrd1A   RING/U-box superfamily protein 
 ath-u.5   Hrd1B   RING/U-box superfamily protein 
 gma-u.5   100782356   ERAD-associated E3 ubiquitin-protein ligase HRD1A 
 gma-u.5   100816441   ERAD-associated E3 ubiquitin-protein ligase HRD1B 
 sly-u.5   101257051   ERAD-associated E3 ubiquitin-protein ligase HRD1B 
 sly-u.5   101262220   ERAD-associated E3 ubiquitin-protein ligase HRD1B 
 vvi-u.5   100252838   ERAD-associated E3 ubiquitin-protein ligase HRD1B 
 ppo-u.5   18108304   ERAD-associated E3 ubiquitin-protein ligase HRD1B 
 ppo-u.5   7494403   ERAD-associated E3 ubiquitin-protein ligase HRD1B 
 mtr-u.5   11441665   ERAD-associated E3 ubiquitin-protein ligase HRD1A 
 mtr-u.5   11433721   ERAD-associated E3 ubiquitin-protein ligase HRD1B 

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Top 50 coexpressed genes to 8058559 (sbi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 8058559 (sbi-r.1 coexpression data)

CoexMap"8058559"


sbiLOC8058559 | Entrez gene ID : 8058559      
Species sbi zma osa ath gma sly vvi ppo mtr bra nta cre hvu cit bdi sot tae bna ghi
Paralog 1 2 1 2 2 2 1 2 2 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG sbi04120 [list] [network] Ubiquitin mediated proteolysis (153 genes)
sbi04141 [list] [network] Protein processing in endoplasmic reticulum (204 genes)
GO BP
GO CC
GO MF
Protein XP_002449013.1 [sequence] [blastp]
XP_021317189.1 [sequence] [blastp]
XP_021317190.1 [sequence] [blastp]
XP_021317191.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 5,  plas 1,  vacu 1,  E.R. 1,  E.R._vacu 1,  E.R._plas 1  (predict for XP_002449013.1)
chlo 5,  plas 1,  vacu 1,  E.R. 1,  E.R._vacu 1,  E.R._plas 1  (predict for XP_021317189.1)
chlo 5,  plas 1,  vacu 1,  E.R. 1,  E.R._vacu 1,  E.R._plas 1  (predict for XP_021317190.1)
chlo 5,  plas 1,  vacu 1,  E.R. 1,  E.R._vacu 1,  E.R._plas 1  (predict for XP_021317191.1)
Subcellular
localization
TargetP
scret 8  (predict for XP_002449013.1)
scret 8  (predict for XP_021317189.1)
scret 8  (predict for XP_021317190.1)
scret 8  (predict for XP_021317191.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sbi-r.1
for
8058559

.
zma-u.5
for
100384282

.
zma-u.5
for
100217233

.
osa-u.5
for
4340826

.
ath-u.5
for
Hrd1A

.
ath-u.5
for
Hrd1B

.
gma-u.5
for
100782356

.
gma-u.5
for
100816441

.
sly-u.5
for
101257051

.
sly-u.5
for
101262220

.
vvi-u.5
for
100252838

.
ppo-u.5
for
18108304

.
ppo-u.5
for
7494403

.
mtr-u.5
for
11441665

.
mtr-u.5
for
11433721

.


Ortholog ID: 4723
Species ath ath gma gma sly sly osa zma zma bra bra vvi ppo ppo mtr mtr tae tae hvu ghi ghi bna bna cre sbi sbi sot sot cit bdi bdi nta nta
Symbol Hrd1B Hrd1A LOC100782356 LOC100816441 LOC101257051 LOC101262220 LOC4340826 LOC100384282 LOC100217233 LOC103852213 LOC103840247 LOC100252838 LOC7494403 LOC18108304 LOC11441665 LOC11433721 LOC123155978 LOC123150421 LOC123407184 LOC107891508 LOC107889241 LOC106376848 LOC106406547 CHLRE_04g217922v5 LOC8076437 LOC8058559 LOC102605069 LOC102583193 LOC102610175 LOC100846690 LOC100823150 LOC107832607 LOC107781322
Function* RING/U-box superfamily protein RING/U-box superfamily protein ERAD-associated E3 ubiquitin-protein ligase HRD1A ERAD-associated E3 ubiquitin-protein ligase HRD1B ERAD-associated E3 ubiquitin-protein ligase HRD1B ERAD-associated E3 ubiquitin-protein ligase HRD1B ERAD-associated E3 ubiquitin-protein ligase HRD1-like uncharacterized LOC100384282 ERAD-associated E3 ubiquitin-protein ligase HRD1A ERAD-associated E3 ubiquitin-protein ligase HRD1B ERAD-associated E3 ubiquitin-protein ligase HRD1A ERAD-associated E3 ubiquitin-protein ligase HRD1B ERAD-associated E3 ubiquitin-protein ligase HRD1B ERAD-associated E3 ubiquitin-protein ligase HRD1B ERAD-associated E3 ubiquitin-protein ligase HRD1A ERAD-associated E3 ubiquitin-protein ligase HRD1B ERAD-associated E3 ubiquitin-protein ligase HRD1 ERAD-associated E3 ubiquitin-protein ligase HRD1 ERAD-associated E3 ubiquitin-protein ligase HRD1-like ERAD-associated E3 ubiquitin-protein ligase HRD1B ERAD-associated E3 ubiquitin-protein ligase HRD1B ERAD-associated E3 ubiquitin-protein ligase HRD1A ERAD-associated E3 ubiquitin-protein ligase HRD1B uncharacterized protein ERAD-associated E3 ubiquitin-protein ligase HRD1 ERAD-associated E3 ubiquitin-protein ligase HRD1 ERAD-associated E3 ubiquitin-protein ligase HRD1B-like ERAD-associated E3 ubiquitin-protein ligase HRD1B-like ERAD-associated E3 ubiquitin-protein ligase HRD1B-like ERAD-associated E3 ubiquitin-protein ligase HRD1 ERAD-associated E3 ubiquitin-protein ligase HRD1 ERAD-associated E3 ubiquitin-protein ligase HRD1B-like ERAD-associated E3 ubiquitin-protein ligase HRD1B-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04141 Protein processing in endoplasmic reticulum 13
ath03060 Protein export 4
ath04145 Phagosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04141 Protein processing in endoplasmic reticulum 17
gma03060 Protein export 4
gma04145 Phagosome 3
gma04120 Ubiquitin mediated proteolysis 2
gma04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04141 Protein processing in endoplasmic reticulum 17
gma04145 Phagosome 5
gma03060 Protein export 3
gma04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04141 Protein processing in endoplasmic reticulum 12
sly03060 Protein export 4
sly04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04120 Ubiquitin mediated proteolysis 3
sly04141 Protein processing in endoplasmic reticulum 3
sly03015 mRNA surveillance pathway 3
sly03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04141 Protein processing in endoplasmic reticulum 12
bra04145 Phagosome 4
bra03060 Protein export 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04120 Ubiquitin mediated proteolysis 2
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04141 Protein processing in endoplasmic reticulum 4
vvi04120 Ubiquitin mediated proteolysis 3
vvi03050 Proteasome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04141 Protein processing in endoplasmic reticulum 4
ppo04146 Peroxisome 3
ppo03060 Protein export 3
ppo01200 Carbon metabolism 2
ppo04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04141 Protein processing in endoplasmic reticulum 13
mtr04145 Phagosome 3
mtr04120 Ubiquitin mediated proteolysis 2
mtr03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04141 Protein processing in endoplasmic reticulum 9
mtr04120 Ubiquitin mediated proteolysis 2
mtr00860 Porphyrin metabolism 2
mtr01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04141 Protein processing in endoplasmic reticulum 14
tae04145 Phagosome 6
tae04120 Ubiquitin mediated proteolysis 3
tae03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04141 Protein processing in endoplasmic reticulum 12
tae04145 Phagosome 4
tae04120 Ubiquitin mediated proteolysis 3
tae03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03060 Protein export 4
hvu04141 Protein processing in endoplasmic reticulum 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04120 Ubiquitin mediated proteolysis 4
ghi04141 Protein processing in endoplasmic reticulum 4
ghi00020 Citrate cycle (TCA cycle) 2
ghi00270 Cysteine and methionine metabolism 2
ghi00566 Sulfoquinovose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04120 Ubiquitin mediated proteolysis 4
ghi04141 Protein processing in endoplasmic reticulum 4
ghi00020 Citrate cycle (TCA cycle) 2
ghi00270 Cysteine and methionine metabolism 2
ghi00566 Sulfoquinovose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04141 Protein processing in endoplasmic reticulum 6
bna04120 Ubiquitin mediated proteolysis 2
bna00010 Glycolysis / Gluconeogenesis 2
bna00620 Pyruvate metabolism 2
bna00630 Glyoxylate and dicarboxylate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04141 Protein processing in endoplasmic reticulum 13
bna04145 Phagosome 9
bna04120 Ubiquitin mediated proteolysis 2
bna00510 N-Glycan biosynthesis 2
bna04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03050 Proteasome 3
sbi04120 Ubiquitin mediated proteolysis 2
sbi04141 Protein processing in endoplasmic reticulum 2
sbi00190 Oxidative phosphorylation 2
sbi04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04141 Protein processing in endoplasmic reticulum 3
sbi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04141 Protein processing in endoplasmic reticulum 10
sot03060 Protein export 3
sot04145 Phagosome 3
sot04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04141 Protein processing in endoplasmic reticulum 5
cit04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03013 Nucleocytoplasmic transport 2
bdi03040 Spliceosome 2
bdi04120 Ubiquitin mediated proteolysis 2
bdi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03013 Nucleocytoplasmic transport 2
bdi03040 Spliceosome 2
bdi04120 Ubiquitin mediated proteolysis 2
bdi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04120 Ubiquitin mediated proteolysis 2
nta04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04141 Protein processing in endoplasmic reticulum 6
nta04120 Ubiquitin mediated proteolysis 4
nta00230 Purine metabolism 2
nta00232 Caffeine metabolism 2
nta01232 Nucleotide metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 842812 820854 100782356 100816441 101257051 101262220 4340826 100384282 100217233 103852213 103840247 100252838 7494403 18108304 11441665 11433721 123155978 123150421 123407184 107891508 107889241 106376848 106406547 5726815 8076437 8058559 102605069 102583193 102610175 100846690 100823150 107832607 107781322
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