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Orthologous genes in OrthoFinder**

Species Gene Description
 sbi-r.1   8061610   geranylgeranyl transferase type-2 subunit alpha 1 
 zma-u.5   100285137   rab geranylgeranyl transferase like protein 
 zma-u.5   100501641   Geranylgeranyl transferase type-2 subunit alpha 1 
 osa-u.5   4341838   geranylgeranyl transferase type-2 subunit alpha 1 
 ath-u.5   RGTA1   RAB geranylgeranyl transferase alpha subunit 1 
 gma-u.5   100780581   geranylgeranyl transferase type-2 subunit alpha 1 
 gma-u.5   100807900   geranylgeranyl transferase type-2 subunit alpha 1 
 gma-u.5   100783193   geranylgeranyl transferase type-2 subunit alpha 1 
 sly-u.5   101257956   geranylgeranyl transferase type-2 subunit alpha 1 
 vvi-u.5   100248920   geranylgeranyl transferase type-2 subunit alpha 1 
 ppo-u.5   7462243   geranylgeranyl transferase type-2 subunit alpha 1 
 mtr-u.5   11423207   geranylgeranyl transferase type-2 subunit alpha 1 

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Top 50 coexpressed genes to 8061610 (sbi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 8061610 (sbi-r.1 coexpression data)

CoexMap"8061610"


sbiLOC8061610 | Entrez gene ID : 8061610      
Species sbi zma osa ath gma sly vvi ppo mtr cre ghi cit hvu bdi sot bra tae nta bna
Paralog 1 2 1 1 3 1 1 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0018344 [list] [network] protein geranylgeranylation  (7 genes)  IEA  
GO CC
GO:0005968 [list] [network] Rab-protein geranylgeranyltransferase complex  (3 genes)  IEA  
GO:0005737 [list] [network] cytoplasm  (4816 genes)  IEA  
GO MF
GO:0004663 [list] [network] Rab geranylgeranyltransferase activity  (2 genes)  IEA  
GO:0005515 [list] [network] protein binding  (4172 genes)  IEA  
Protein XP_002437444.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 6,  cyto 1,  chlo 1,  cysk 1,  golg_plas 1,  cyto_pero 1,  cyto_E.R. 1  (predict for XP_002437444.1)
Subcellular
localization
TargetP
other 5,  mito 4  (predict for XP_002437444.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sbi-r.1
for
8061610

.
zma-u.5
for
100285137

.
zma-u.5
for
100501641

.
osa-u.5
for
4341838

.
ath-u.5
for
RGTA1

.
gma-u.5
for
100780581

.
gma-u.5
for
100807900

.
gma-u.5
for
100783193

.
sly-u.5
for
101257956

.
vvi-u.5
for
100248920

.
ppo-u.5
for
7462243

.
mtr-u.5
for
11423207

.


Ortholog ID: 6620
Species ath gma gma sly osa zma zma bra bra vvi ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol RGTA1 LOC100780581 LOC100783193 LOC101257956 LOC4341838 LOC100501641 LOC100285137 LOC103862144 LOC103861487 LOC100248920 LOC7462243 LOC11423207 LOC123149079 LOC123165328 LOC123413324 LOC107942930 LOC107962198 LOC106396711 LOC106442037 CHLRE_07g339350v5 LOC8061610 LOC102602760 LOC102615884 LOC100838450 LOC107794990 LOC107803956
Function* RAB geranylgeranyl transferase alpha subunit 1 geranylgeranyl transferase type-2 subunit alpha 1 geranylgeranyl transferase type-2 subunit alpha 1 geranylgeranyl transferase type-2 subunit alpha 1 geranylgeranyl transferase type-2 subunit alpha 1 Geranylgeranyl transferase type-2 subunit alpha 1 rab geranylgeranyl transferase like protein geranylgeranyl transferase type-2 subunit alpha 1 geranylgeranyl transferase type-2 subunit alpha 1 geranylgeranyl transferase type-2 subunit alpha 1 geranylgeranyl transferase type-2 subunit alpha 1 geranylgeranyl transferase type-2 subunit alpha 1 geranylgeranyl transferase type-2 subunit alpha 1 geranylgeranyl transferase type-2 subunit alpha 1 geranylgeranyl transferase type-2 subunit alpha 1 geranylgeranyl transferase type-2 subunit alpha 1 geranylgeranyl transferase type-2 subunit alpha 1 geranylgeranyl transferase type-2 subunit alpha 1-like geranylgeranyl transferase type-2 subunit alpha 1-like uncharacterized protein geranylgeranyl transferase type-2 subunit alpha 1 uncharacterized LOC102602760 geranylgeranyl transferase type-2 subunit alpha 1 geranylgeranyl transferase type-2 subunit alpha 1 geranylgeranyl transferase type-2 subunit alpha 1 geranylgeranyl transferase type-2 subunit alpha 1-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03050 Proteasome 3
ath04141 Protein processing in endoplasmic reticulum 3
ath00510 N-Glycan biosynthesis 2
ath00513 Various types of N-glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04148 Efferocytosis 3
gma03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03050 Proteasome 8
sly04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04142 Lysosome 2
osa03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03015 mRNA surveillance pathway 2
zma04382 Cornified envelope formation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04142 Lysosome 2
zma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03018 RNA degradation 2
bra04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04142 Lysosome 4
vvi00240 Pyrimidine metabolism 2
vvi01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04142 Lysosome 3
ppo04144 Endocytosis 3
ppo04120 Ubiquitin mediated proteolysis 3
ppo05100 Bacterial invasion of epithelial cells 2
ppo00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03013 Nucleocytoplasmic transport 2
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 3
ghi04382 Cornified envelope formation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 4
ghi04382 Cornified envelope formation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03083 Polycomb repressive complex 3
nta03420 Nucleotide excision repair 2
nta03460 Fanconi anemia pathway 2
nta02010 ABC transporters 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03083 Polycomb repressive complex 4
nta03420 Nucleotide excision repair 2
nta03460 Fanconi anemia pathway 2
nta02010 ABC transporters 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 828551 100780581 100783193 101257956 4341838 100501641 100285137 103862144 103861487 100248920 7462243 11423207 123149079 123165328 123413324 107942930 107962198 106396711 106442037 5718092 8061610 102602760 102615884 100838450 107794990 107803956
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