ATTED-II : GeneCoexpression result

Species	Gene	Description
sbi-r.1	8063142	uncharacterized LOC8063142
zma-u.5	103650918	ubinuclein-1
osa-u.5	4338838	ubinuclein-1
osa-u.5	4325002	ubinuclein-1
tae-r.2	123133852	ubinuclein-1
tae-r.2	123182081	ubinuclein-1
hvu-r.1	123445119	ubinuclein-1-like
hvu-r.1	123442594	ubinuclein-1
bdi-r.1	100823566	ubinuclein-1
bdi-r.1	100826032	ubinuclein-1
ath-u.5	AT1G21610	wound-responsive family protein
ath-u.5	AT1G77310	wound-responsive family protein
gma-u.5	100793966	ubinuclein-1
gma-u.5	100799794	ubinuclein-1
gma-u.5	100795185	ubinuclein-1
sly-u.5	101258212	ubinuclein-1-like
bra-r.6	103853066	ubinuclein-2
bra-r.6	103830572	ubinuclein-2
bra-r.6	103832183	ubinuclein-2
vvi-u.5	100255662	ubinuclein-1
ppo-u.5	7466868	ubinuclein-1
ppo-u.5	7467863	ubinuclein-1
mtr-u.5	25489705	ubinuclein-1
mtr-u.5	25482447	ubinuclein-1
ghi-r.1	107952115	ubinuclein-1
ghi-r.1	107910368	ubinuclein-1
ghi-r.1	107903983	ubinuclein-1
bna-r.1	106354614	ubinuclein-2-like
bna-r.1	106353484	ubinuclein-2-like
bna-r.1	106365949	ubinuclein-2-like
sot-r.1	102605978	uncharacterized LOC102605978
cit-r.1	102623414	ubinuclein-1
nta-r.1	107787647	ubinuclein-1-like
nta-r.1	107781472	ubinuclein-1

Annotation

functional annotation

KEGG

GO BP

GO CC

GO:0005634 [list] [network] nucleus

(2977 genes)

IEA

GO MF

Protein

XP_002456749.1 [sequence] [blastp]
XP_021312645.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 9, cyto 1, pero 1, cyto_pero 1	(predict for XP_002456749.1)
chlo 6, vacu 2, nucl 1	(predict for XP_021312645.1)

Subcellular
localization
TargetP

chlo 6	(predict for XP_002456749.1)
scret 9	(predict for XP_021312645.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	sbi-r.1 for 8063142	zma-u.5 for 103650918	osa-u.5 for 4338838	osa-u.5 for 4325002	tae-r.2 for 123133852	tae-r.2 for 123182081	hvu-r.1 for 123445119	hvu-r.1 for 123442594	bdi-r.1 for 100823566	bdi-r.1 for 100826032	ath-u.5 for AT1G21610	ath-u.5 for AT1G77310	gma-u.5 for 100793966	gma-u.5 for 100799794	gma-u.5 for 100795185	sly-u.5 for 101258212	bra-r.6 for 103853066	bra-r.6 for 103830572	bra-r.6 for 103832183	vvi-u.5 for 100255662	ppo-u.5 for 7466868	ppo-u.5 for 7467863	mtr-u.5 for 25489705	mtr-u.5 for 25482447	ghi-r.1 for 107952115	ghi-r.1 for 107910368	ghi-r.1 for 107903983	bna-r.1 for 106354614	bna-r.1 for 106353484	bna-r.1 for 106365949	sot-r.1 for 102605978	cit-r.1 for 102623414	nta-r.1 for 107787647	nta-r.1 for 107781472

Ortholog

Ortholog ID: 4313

Species

sbi

zma

osa

tae

hvu

bdi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

Symbol

Function^*

uncharacterized LOC8063142

ubinuclein-1

ubinuclein-1-like

ubinuclein-1

wound-responsive family protein

ubinuclein-1

ubinuclein-1-like

ubinuclein-2

ubinuclein-1

ubinuclein-2-like

ubinuclein-2

ubinuclein-2-like

uncharacterized LOC102605978

ubinuclein-1

ubinuclein-1-like

ubinuclein-1

Coexmap

Please wait a moment.

Coexpression

Please wait a moment.

KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03013	Nucleocytoplasmic transport	3
zma03008	Ribosome biogenesis in eukaryotes	2
zma03250	Viral life cycle - HIV-1	2
zma03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03040	Spliceosome	3
osa03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04120	Ubiquitin mediated proteolysis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03082	ATP-dependent chromatin remodeling	2
hvu03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04075	Plant hormone signal transduction	2
bdi04626	Plant-pathogen interaction	2
bdi03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03440	Homologous recombination	3
ath03410	Base excision repair	2
ath03430	Mismatch repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03082	ATP-dependent chromatin remodeling	2
gma04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03013	Nucleocytoplasmic transport	4
mtr03082	ATP-dependent chromatin remodeling	3
mtr04120	Ubiquitin mediated proteolysis	2
mtr03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03030	DNA replication	3
mtr03410	Base excision repair	3
mtr03420	Nucleotide excision repair	3
mtr03430	Mismatch repair	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03050	Proteasome	8
ghi03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00400	Phenylalanine, tyrosine and tryptophan biosynthesis	2
ghi01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03050	Proteasome	8
ghi03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03082	ATP-dependent chromatin remodeling	2
bna03013	Nucleocytoplasmic transport	2
bna03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03082	ATP-dependent chromatin remodeling	4
nta03450	Non-homologous end-joining	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04136	Autophagy - other	4
nta00562	Inositol phosphate metabolism	2
nta04070	Phosphatidylinositol signaling system	2
nta04145	Phagosome	2
nta03082	ATP-dependent chromatin remodeling	2

Expression

Expression pattern

Entrez Gene ID^*

8063142

103650918

4338838

4325002

123133852

123182081

123071807

123445119

123442594

100823566

100826032

838762

844067

100799794

100795185

100778848

101258212

103853066

103830572

103832183

100255662

7466868

7467863

25489705

25482447

107910368

107903983

107951490

106353484

111213115

106396982

102605978

102623414

107787647

107781472

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 8063142 (sbi-r.1 coexpression data)

Top 50 enrichment test to 8063142 (sbi-r.1 coexpression data)


Species	sbi	zma	osa	tae	hvu	bdi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre
Paralog	1	1	2	2	2	2	2	3	1	3	1	2	2	3	3	1	1	2	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 8063142 (sbi-r.1 coexpression data)

Top 50 enrichment test to 8063142 (sbi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**