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Orthologous genes in OrthoFinder**

Species Gene Description
 sbi-r.1  8063285  pentatricopeptide repeat-containing protein At3g46790, chloroplastic 
 zma-u.5  103647916  pentatricopeptide repeat-containing protein At3g46790, chloroplastic 
 osa-u.5  4350065  pentatricopeptide repeat-containing protein At1g11290, chloroplastic 
 tae-r.2  123096352  pentatricopeptide repeat-containing protein At3g12770 
 tae-r.2  123086543  pentatricopeptide repeat-containing protein At3g12770 
 hvu-r.1  123447883  pentatricopeptide repeat-containing protein At3g12770-like 
 bdi-r.1  100831064  pentatricopeptide repeat-containing protein At3g12770 
 gma-u.5  100812370  pentatricopeptide repeat-containing protein At3g24000, mitochondrial 
 mtr-u.5  25488485  pentatricopeptide repeat-containing protein At3g24000, mitochondrial 

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Top 50 coexpressed genes to 8063285 (sbi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 8063285 (sbi-r.1 coexpression data)

CoexMap"8063285"


sbiLOC8063285 | Entrez gene ID : 8063285
Species sbi zma osa tae hvu bdi gma mtr cit sly sot bra ath bna ppo vvi ghi cre nta
Paralog 1 1 1 2 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0009451 [list] [network] RNA modification  (378 genes)  IEA  
GO CC
GO MF
GO:0003723 [list] [network] RNA binding  (1243 genes)  IEA  
GO:0005515 [list] [network] protein binding  (4172 genes)  IEA  
Protein XP_002443200.1 [sequence] [blastp]
XP_021301808.1 [sequence] [blastp]
XP_021301809.1 [sequence] [blastp]
Subcellular
localization
wolf
mito 4,  cyto 2,  mito_plas 2,  chlo 1,  vacu 1,  cyto_E.R. 1,  cyto_plas 1  (predict for XP_002443200.1)
mito 4,  cyto 2,  mito_plas 2,  chlo 1,  vacu 1,  cyto_E.R. 1,  cyto_plas 1  (predict for XP_021301808.1)
mito 4,  cyto 2,  mito_plas 2,  chlo 1,  vacu 1,  cyto_E.R. 1,  cyto_plas 1  (predict for XP_021301809.1)
Subcellular
localization
TargetP
mito 7  (predict for XP_002443200.1)
mito 7  (predict for XP_021301808.1)
mito 7  (predict for XP_021301809.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID
Other ID Link Target Reference

sbi-r.1
for
8063285


zma-u.5
for
103647916


osa-u.5
for
4350065


tae-r.2
for
123096352


tae-r.2
for
123086543


hvu-r.1
for
123447883


bdi-r.1
for
100831064


gma-u.5
for
100812370


mtr-u.5
for
25488485



Ortholog ID: 14445
Species sbi zma osa tae tae hvu bdi gma mtr
Symbol LOC8063285 LOC103647916 LOC4350065 LOC123096352 LOC123086543 LOC123447883 LOC100831064 LOC100812370 LOC25488485
Function* pentatricopeptide repeat-containing protein At3g46790, chloroplastic pentatricopeptide repeat-containing protein At3g46790, chloroplastic pentatricopeptide repeat-containing protein At1g11290, chloroplastic pentatricopeptide repeat-containing protein At3g12770 pentatricopeptide repeat-containing protein At3g12770 pentatricopeptide repeat-containing protein At3g12770-like pentatricopeptide repeat-containing protein At3g12770 pentatricopeptide repeat-containing protein At3g24000, mitochondrial pentatricopeptide repeat-containing protein At3g24000, mitochondrial
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03020 RNA polymerase 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01232 Nucleotide metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 8063285 103647916 4350065 123096352 123086543 123447883 100831064 100812370 25488485
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