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Orthologous genes in OrthoFinder**

Species Gene Description
 sbi-r.1   8065093   U4/U6.U5 tri-snRNP-associated protein 2 
 zma-u.5   100285671   uncharacterized LOC100285671 
 osa-u.5   4347019   uncharacterized LOC4347019 
 ath-u.5   AT4G22350   Ubiquitin C-terminal hydrolases superfamily protein 
 ath-u.5   AT4G22410   U4/U6.U5 tri-snRNP-associated-like protein 
 ath-u.5   AT4G22285   Ubiquitin C-terminal hydrolases superfamily protein 
 gma-u.5   100792529   U4/U6.U5 tri-snRNP-associated protein 2 
 gma-u.5   100792642   U4/U6.U5 tri-snRNP-associated protein 2 
 sly-u.5   101263781   uncharacterized LOC101263781 
 vvi-u.5   100251887   uncharacterized LOC100251887 
 ppo-u.5   7463667   uncharacterized LOC7463667 
 ppo-u.5   7455836   uncharacterized LOC7455836 
 mtr-u.5   25492882   U4/U6.U5 tri-snRNP-associated protein 2 
 mtr-u.5   11437744   U4/U6.U5 tri-snRNP-associated protein 2 

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Top 50 coexpressed genes to 8065093 (sbi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 8065093 (sbi-r.1 coexpression data)

CoexMap"8065093"


sbiLOC8065093 | Entrez gene ID : 8065093      
Species sbi zma osa ath gma sly vvi ppo mtr bra nta cre hvu cit bdi sot tae bna ghi
Paralog 1 1 1 3 2 1 1 2 2 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG sbi03040 [list] [network] Spliceosome (208 genes)
GO BP
GO:0000245 [list] [network] spliceosomal complex assembly  (17 genes)  IEA  
GO:0016579 [list] [network] protein deubiquitination  (78 genes)  IEA  
GO:0006397 [list] [network] mRNA processing  (222 genes)  IEA  
GO CC
GO MF
GO:0004843 [list] [network] cysteine-type deubiquitinase activity  (64 genes)  IEA  
GO:0008270 [list] [network] zinc ion binding  (824 genes)  IEA  
Protein XP_002437474.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 5,  cyto 3,  cysk_nucl 3,  nucl_plas 3  (predict for XP_002437474.1)
Subcellular
localization
TargetP
other 8  (predict for XP_002437474.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sbi-r.1
for
8065093

.
zma-u.5
for
100285671

.
osa-u.5
for
4347019

.
ath-u.5
for
AT4G22350

.
ath-u.5
for
AT4G22410

.
ath-u.5
for
AT4G22285

.
gma-u.5
for
100792529

.
gma-u.5
for
100792642

.
sly-u.5
for
101263781

.
vvi-u.5
for
100251887

.
ppo-u.5
for
7463667

.
ppo-u.5
for
7455836

.
mtr-u.5
for
25492882

.
mtr-u.5
for
11437744

.


Ortholog ID: 5806
Species ath ath gma gma sly osa zma bra bra vvi ppo ppo mtr mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol AT4G22285 AT4G22350 LOC100792642 LOC100792529 LOC101263781 LOC4347019 LOC100285671 LOC103859993 LOC103861306 LOC100251887 LOC7455836 LOC7463667 LOC25492882 LOC11437744 LOC123167533 LOC123088443 LOC123426749 LOC107963714 LOC107960167 LOC106376520 LOC106351450 CHLRE_17g721600v5 LOC8065093 LOC102603602 LOC102617640 LOC100842673 LOC107775060 LOC107814517
Function* Ubiquitin C-terminal hydrolases superfamily protein Ubiquitin C-terminal hydrolases superfamily protein U4/U6.U5 tri-snRNP-associated protein 2 U4/U6.U5 tri-snRNP-associated protein 2 uncharacterized LOC101263781 uncharacterized LOC4347019 uncharacterized LOC100285671 U4/U6.U5 tri-snRNP-associated protein 2 U4/U6.U5 tri-snRNP-associated protein 2 uncharacterized LOC100251887 uncharacterized LOC7455836 uncharacterized LOC7463667 U4/U6.U5 tri-snRNP-associated protein 2 U4/U6.U5 tri-snRNP-associated protein 2 U4/U6.U5 tri-snRNP-associated protein 2 U4/U6.U5 tri-snRNP-associated protein 2 U4/U6.U5 tri-snRNP-associated protein 2-like U4/U6.U5 tri-snRNP-associated protein 2 U4/U6.U5 tri-snRNP-associated protein 2 U4/U6.U5 tri-snRNP-associated protein 2-like U4/U6.U5 tri-snRNP-associated protein 2-like uncharacterized protein U4/U6.U5 tri-snRNP-associated protein 2 U4/U6.U5 tri-snRNP-associated protein 2-like uncharacterized LOC102617640 U4/U6.U5 tri-snRNP-associated protein 2 uncharacterized LOC107775060 uncharacterized LOC107814517
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 3
ath03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 4
ath03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03013 Nucleocytoplasmic transport 4
gma03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 5
sly03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 2
zma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03015 mRNA surveillance pathway 3
bra03013 Nucleocytoplasmic transport 2
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 3
vvi04136 Autophagy - other 2
vvi04120 Ubiquitin mediated proteolysis 2
vvi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03013 Nucleocytoplasmic transport 5
mtr03040 Spliceosome 3
mtr03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 9
tae00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 6
bna03013 Nucleocytoplasmic transport 2
bna03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 6
bna03013 Nucleocytoplasmic transport 6
bna00970 Aminoacyl-tRNA biosynthesis 3
bna03022 Basal transcription factors 2
bna03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 11
cre03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 3
sot03040 Spliceosome 2
sot00770 Pantothenate and CoA biosynthesis 2
sot01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 4
cit04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 5
bdi03013 Nucleocytoplasmic transport 2
bdi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 4
nta03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 4
nta03040 Spliceosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 5008155 828330 100792642 100792529 101263781 4347019 100285671 103859993 103861306 100251887 7455836 7463667 25492882 11437744 123167533 123088443 123426749 107963714 107960167 106376520 106351450 5722698 8065093 102603602 102617640 100842673 107775060 107814517
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