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Orthologous genes in OrthoFinder**

Species Gene Description
 sbi-r.1   8070969   U6 snRNA-associated Sm-like protein LSm6 
 zma-u.5   100192719   Small nuclear ribonucleoprotein F 
 osa-u.5   112936013   uncharacterized LOC112936013 
 osa-u.5   4329449   U6 snRNA-associated Sm-like protein LSm6 
 ath-u.5   LSM6B   Small nuclear ribonucleoprotein family protein 
 ath-u.5   LSM6A   Small nuclear ribonucleoprotein family protein 
 gma-u.5   100306112   uncharacterized LOC100306112 
 gma-u.5   100797765   sm-like protein LSM6A 
 sly-u.5   101268815   sm-like protein LSM36B 
 vvi-u.5   100259432   sm-like protein LSM36B 
 ppo-u.5   7472468   sm-like protein LSM36B 
 ppo-u.5   7464596   sm-like protein LSM36B 
 mtr-u.5   11420271   sm-like protein LSM6A 

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Top 50 coexpressed genes to 8070969 (sbi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 8070969 (sbi-r.1 coexpression data)

CoexMap"8070969"


sbiLOC8070969 | Entrez gene ID : 8070969      
Species sbi zma osa ath gma sly vvi ppo mtr bra nta cre hvu cit bdi sot tae bna ghi
Paralog 1 1 2 2 2 1 1 2 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG sbi03018 [list] [network] RNA degradation (112 genes)
sbi03040 [list] [network] Spliceosome (208 genes)
GO BP
GO:0030490 [list] [network] maturation of SSU-rRNA  (56 genes)  IEA  
GO:0000398 [list] [network] mRNA splicing, via spliceosome  (170 genes)  IEA  
GO CC
GO:0005688 [list] [network] U6 snRNP  (9 genes)  IEA  
GO:0005732 [list] [network] sno(s)RNA-containing ribonucleoprotein complex  (27 genes)  IEA  
GO:0046540 [list] [network] U4/U6 x U5 tri-snRNP complex  (31 genes)  IEA  
GO:0000932 [list] [network] P-body  (47 genes)  IEA  
GO:0005730 [list] [network] nucleolus  (194 genes)  IEA  
GO MF
GO:0003723 [list] [network] RNA binding  (1243 genes)  IEA  
Protein XP_002447708.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  nucl 2,  cyto 2,  cyto_nucl 2  (predict for XP_002447708.1)
Subcellular
localization
TargetP
other 8,  chlo 3  (predict for XP_002447708.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sbi-r.1
for
8070969

.
zma-u.5
for
100192719

.
osa-u.5
for
112936013

.
osa-u.5
for
4329449

.
ath-u.5
for
LSM6B

.
ath-u.5
for
LSM6A

.
gma-u.5
for
100306112

.
gma-u.5
for
100797765

.
sly-u.5
for
101268815

.
vvi-u.5
for
100259432

.
ppo-u.5
for
7472468

.
ppo-u.5
for
7464596

.
mtr-u.5
for
11420271

.


Ortholog ID: 5488
Species ath ath gma gma sly osa osa zma bra bra vvi ppo ppo mtr tae tae hvu ghi ghi bna bna cre sbi sbi sot cit bdi bdi nta nta
Symbol LSM6B LSM6A LOC100797765 LOC100306112 LOC101268815 LOC112936013 LOC4329449 LOC100192719 LOC103841827 LOC103862924 LOC100259432 LOC7472468 LOC7464596 LOC11420271 LOC123189061 LOC123053147 LOC123426544 LOC121206315 LOC107928430 LOC106445123 LOC106396814 CHLRE_03g151750v5 LOC8070969 LOC110434907 LOC102588530 LOC102615299 LOC100830041 LOC100838348 LOC107793699 LOC107761481
Function* Small nuclear ribonucleoprotein family protein Small nuclear ribonucleoprotein family protein sm-like protein LSM6A uncharacterized LOC100306112 sm-like protein LSM36B uncharacterized LOC112936013 U6 snRNA-associated Sm-like protein LSm6 Small nuclear ribonucleoprotein F sm-like protein LSM6A sm-like protein LSM6A sm-like protein LSM36B sm-like protein LSM36B sm-like protein LSM36B sm-like protein LSM6A U6 snRNA-associated Sm-like protein LSm6 U6 snRNA-associated Sm-like protein LSm6 U6 snRNA-associated Sm-like protein LSm6 sm-like protein LSM36B sm-like protein LSM36B sm-like protein LSM6A sm-like protein LSM6A uncharacterized protein U6 snRNA-associated Sm-like protein LSm6 U6 snRNA-associated Sm-like protein LSm6 sm-like protein LSM36B sm-like protein LSM36B U6 snRNA-associated Sm-like protein LSm6 U6 snRNA-associated Sm-like protein LSm6 sm-like protein LSM36B sm-like protein LSM36B
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 4
ath03018 RNA degradation 2
ath03020 RNA polymerase 2
ath03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 10
ath03018 RNA degradation 5
ath03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 4
gma03010 Ribosome 3
gma03018 RNA degradation 3
gma03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 6
gma03040 Spliceosome 5
gma03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 5
sly03020 RNA polymerase 2
sly03420 Nucleotide excision repair 2
sly03018 RNA degradation 2
sly03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 14
osa03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 3
osa03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 10
zma03018 RNA degradation 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00190 Oxidative phosphorylation 10
bra03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 2
bra00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03050 Proteasome 6
vvi03010 Ribosome 2
vvi03018 RNA degradation 2
vvi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 5
ppo03040 Spliceosome 3
ppo03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 3
ppo03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 10
mtr03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 8
tae03018 RNA degradation 4
tae03010 Ribosome 2
tae03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 9
tae03018 RNA degradation 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 3
hvu03013 Nucleocytoplasmic transport 2
hvu03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03018 RNA degradation 4
ghi03040 Spliceosome 4
ghi00510 N-Glycan biosynthesis 2
ghi00513 Various types of N-glycan biosynthesis 2
ghi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03018 RNA degradation 4
ghi03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 6
bna03040 Spliceosome 6
bna03013 Nucleocytoplasmic transport 2
bna04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 6
bna03040 Spliceosome 6
bna03013 Nucleocytoplasmic transport 2
bna04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 11
cre03013 Nucleocytoplasmic transport 3
cre03018 RNA degradation 2
cre03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 3
sbi03083 Polycomb repressive complex 3
sbi04120 Ubiquitin mediated proteolysis 3
sbi04141 Protein processing in endoplasmic reticulum 3
sbi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00190 Oxidative phosphorylation 3
sbi03018 RNA degradation 2
sbi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 4
sot03040 Spliceosome 3
sot03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00190 Oxidative phosphorylation 2
bdi04130 SNARE interactions in vesicular transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 3
bdi03420 Nucleotide excision repair 3
bdi04120 Ubiquitin mediated proteolysis 2
bdi04141 Protein processing in endoplasmic reticulum 2
bdi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 3
nta03040 Spliceosome 3
nta03013 Nucleocytoplasmic transport 2
nta04120 Ubiquitin mediated proteolysis 2
nta03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 7
nta03013 Nucleocytoplasmic transport 2
nta04120 Ubiquitin mediated proteolysis 2
nta03018 RNA degradation 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 818985 825150 100797765 100306112 101268815 112936013 4329449 100192719 103841827 103862924 100259432 7472468 7464596 11420271 123189061 123053147 123426544 121206315 107928430 106445123 106396814 5721122 8070969 110434907 102588530 102615299 100830041 100838348 107793699 107761481
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