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Orthologous genes in OrthoFinder**

Species Gene Description
 sbi-r.1   8072074   50S ribosomal protein L13, chloroplastic 
 zma-u.5   100192010   50S ribosomal protein L13, chloroplastic-like 
 osa-u.5   4325555   large ribosomal subunit protein uL13c 
 ath-u.5   emb1473   Ribosomal protein L13 family protein 
 gma-u.5   100305981   50S ribosomal protein L13 
 sly-u.5   101248220   large ribosomal subunit protein uL13c 
 sly-u.5   101244642   50S ribosomal protein L13, chloroplastic 
 vvi-u.5   100248623   large ribosomal subunit protein uL13c 
 ppo-u.5   18095420   50S ribosomal protein L13, chloroplastic 
 ppo-u.5   7472330   50S ribosomal protein L13, chloroplastic 
 mtr-u.5   25501193   50S ribosomal protein L13, chloroplastic 

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Top 50 coexpressed genes to 8072074 (sbi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 8072074 (sbi-r.1 coexpression data)

CoexMap"8072074"


sbiLOC8072074 | Entrez gene ID : 8072074      
Species sbi zma osa ath gma sly vvi ppo mtr bra nta cre hvu cit bdi sot tae bna ghi
Paralog 1 1 1 1 1 2 1 2 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG sbi03010 [list] [network] Ribosome (360 genes)
GO BP
GO:0017148 [list] [network] negative regulation of translation  (22 genes)  IEA  
GO:0006412 [list] [network] translation  (459 genes)  IEA  
GO CC
GO:0022625 [list] [network] cytosolic large ribosomal subunit  (113 genes)  IEA  
GO:0005840 [list] [network] ribosome  (326 genes)  IEA  
GO MF
GO:0003729 [list] [network] mRNA binding  (267 genes)  IEA  
GO:0003735 [list] [network] structural constituent of ribosome  (320 genes)  IEA  
Protein XP_002456358.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9,  cyto 1,  mito 1  (predict for XP_002456358.1)
Subcellular
localization
TargetP
chlo 9,  mito 3  (predict for XP_002456358.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sbi-r.1
for
8072074

.
zma-u.5
for
100192010

.
osa-u.5
for
4325555

.
ath-u.5
for
emb1473

.
gma-u.5
for
100305981

.
sly-u.5
for
101248220

.
sly-u.5
for
101244642

.
vvi-u.5
for
100248623

.
ppo-u.5
for
18095420

.
ppo-u.5
for
7472330

.
mtr-u.5
for
25501193

.


Ortholog ID: 6441
Species ath gma sly sly osa zma bra bra vvi ppo ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot sot bdi nta nta
Symbol emb1473 LOC100305981 LOC101248220 LOC101244642 LOC4325555 LOC100192010 LOC103832342 LOC103853139 LOC100248623 LOC18095420 LOC7472330 LOC25501193 LOC123079012 LOC123070606 LOC123444406 LOC107895312 LOC107928120 LOC106356008 LOC106345844 CHLRE_06g264350v5 LOC8072074 LOC102587160 LOC102598992 LOC100835720 LOC107824248 LOC107802615
Function* Ribosomal protein L13 family protein 50S ribosomal protein L13 large ribosomal subunit protein uL13c 50S ribosomal protein L13, chloroplastic large ribosomal subunit protein uL13c 50S ribosomal protein L13, chloroplastic-like 50S ribosomal protein L13, chloroplastic 50S ribosomal protein L13, chloroplastic large ribosomal subunit protein uL13c 50S ribosomal protein L13, chloroplastic 50S ribosomal protein L13, chloroplastic 50S ribosomal protein L13, chloroplastic 50S ribosomal protein L13 50S ribosomal protein L13 50S ribosomal protein L13, chloroplastic 50S ribosomal protein L13, chloroplastic 50S ribosomal protein L13, chloroplastic 50S ribosomal protein L13, chloroplastic 50S ribosomal protein L13, chloroplastic uncharacterized protein 50S ribosomal protein L13, chloroplastic 50S ribosomal protein L13, chloroplastic 50S ribosomal protein L13, chloroplastic-like 50S ribosomal protein L13, chloroplastic large ribosomal subunit protein uL13c-like large ribosomal subunit protein uL13c-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 17
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 17
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 13
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 16
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 7
ghi00999 Biosynthesis of various plant secondary metabolites 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 10
bna03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 9
bna03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03010 Ribosome 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 9
sot00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
sot01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 15
bdi00860 Porphyrin metabolism 3
bdi01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 10
nta00630 Glyoxylate and dicarboxylate metabolism 2
nta00650 Butanoate metabolism 2
nta01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 10
nta01240 Biosynthesis of cofactors 3
nta00061 Fatty acid biosynthesis 2
nta00780 Biotin metabolism 2
nta01212 Fatty acid metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 844199 100305981 101248220 101244642 4325555 100192010 103832342 103853139 100248623 18095420 7472330 25501193 123079012 123070606 123444406 107895312 107928120 106356008 106345844 5721976 8072074 102587160 102598992 100835720 107824248 107802615
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