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Orthologous genes in OrthoFinder**

Species Gene Description
 zma-u.5   100273809   Ubiquitin-protein ligase/ zinc ion binding protein 
 gma-u.5   100778869   E3 ubiquitin-protein ligase SINA-like 10 
 gma-u.5   100797881   E3 ubiquitin-protein ligase SINA-like 10 
 sly-u.5   101256260   putative E3 ubiquitin-protein ligase SINA-like 6 
 vvi-u.5   100260463   E3 ubiquitin-protein ligase SINA-like 7 
 ppo-u.5   18106453   E3 ubiquitin-protein ligase SINA-like 7 
 ppo-u.5   7494532   E3 ubiquitin-protein ligase SINA-like 7 
 mtr-u.5   11432566   polyubiquitin 
 mtr-u.5   11445862   E3 ubiquitin-protein ligase SINA-like 10 

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Top 50 coexpressed genes to 100273809 (zma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100273809 (zma-u.5 coexpression data)

CoexMap"8075993"


sbiLOC8075993 | Entrez gene ID : 8075993      
Species zma gma sly vvi ppo mtr sbi nta bra osa cre cit hvu bdi sot tae ath bna ghi
Paralog 1 2 1 1 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG sbi04120 [list] [network] Ubiquitin mediated proteolysis (153 genes)
GO BP
GO CC
GO:0005737 [list] [network] cytoplasm  (4816 genes)  IEA  
GO MF
GO:0061630 [list] [network] ubiquitin protein ligase activity  (192 genes)  IEA  
GO:0008270 [list] [network] zinc ion binding  (824 genes)  IEA  
Protein XP_002439301.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 6,  chlo 2,  cyto 1  (predict for XP_002439301.1)
Subcellular
localization
TargetP
other 7,  chlo 3  (predict for XP_002439301.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

zma-u.5
for
100273809

.
gma-u.5
for
100778869

.
gma-u.5
for
100797881

.
sly-u.5
for
101256260

.
vvi-u.5
for
100260463

.
ppo-u.5
for
18106453

.
ppo-u.5
for
7494532

.
mtr-u.5
for
11432566

.
mtr-u.5
for
11445862

.


Ortholog ID: 324
Species ath gma sly osa zma vvi ppo ppo mtr tae hvu ghi ghi bna cre sot cit bdi nta nta
Symbol AT5G62800 LOC100778869 LOC101262084 LOC4340862 LOC100273809 LOC100260463 LOC18106453 LOC7494532 LOC11425847 LOC123106050 LOC123449949 LOC107912704 LOC107916650 LOC106446346 CHLRE_14g630150v5 LOC102583504 LOC102613468 LOC100824582 LOC107810964 LOC107825820
Function* Protein with RING/U-box and TRAF-like domain E3 ubiquitin-protein ligase SINA-like 10 putative E3 ubiquitin-protein ligase SINA-like 6 putative E3 ubiquitin-protein ligase SINA-like 9 Ubiquitin-protein ligase/ zinc ion binding protein E3 ubiquitin-protein ligase SINA-like 7 E3 ubiquitin-protein ligase SINA-like 7 E3 ubiquitin-protein ligase SINA-like 7 E3 ubiquitin-protein ligase SINA-like 7 putative E3 ubiquitin-protein ligase SINA-like 9 E3 ubiquitin-protein ligase SINA-like 10 E3 ubiquitin-protein ligase SINA-like 10 E3 ubiquitin-protein ligase SINA-like 10 E3 ubiquitin-protein ligase SINA-like 7 uncharacterized protein uncharacterized LOC102583504 E3 ubiquitin-protein ligase SINA-like 10 E3 ubiquitin-protein ligase SINA-like 7 E3 ubiquitin-protein ligase SINA-like 7 uncharacterized LOC107825820
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03020 RNA polymerase 2
gma03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04120 Ubiquitin mediated proteolysis 5
sly03083 Polycomb repressive complex 2
sly04141 Protein processing in endoplasmic reticulum 2
sly03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03015 mRNA surveillance pathway 3
ppo03013 Nucleocytoplasmic transport 2
ppo00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00280 Valine, leucine and isoleucine degradation 2
ppo00410 beta-Alanine metabolism 2
ppo00640 Propanoate metabolism 2
ppo01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04120 Ubiquitin mediated proteolysis 3
tae00600 Sphingolipid metabolism 3
tae04142 Lysosome 3
tae04136 Autophagy - other 3
tae01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04120 Ubiquitin mediated proteolysis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04144 Endocytosis 5
bna04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03082 ATP-dependent chromatin remodeling 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 836401 100778869 101262084 4340862 100273809 100260463 18106453 7494532 11425847 123106050 123449949 107912704 107916650 106446346 66056318 102583504 102613468 100824582 107810964 107825820
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